asifrim's Stars
grosser/parallel
Ruby: parallel processing made simple and fast
pysam-developers/pysam
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.
biod/sambamba
Tools for working with SAM/BAM data
lindenb/jvarkit
Java utilities for Bioinformatics
bioruby/bioruby
bioruby
pharmbio/sciluigi
A light-weight wrapper library around Spotify's Luigi workflow library to make writing scientific workflows more fluent, flexible and modular
alimanfoo/pysamstats
A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM or BAM file.
raphael-group/hotnet2
HotNet2 is an algorithm for finding significantly altered subnetworks in a large gene interaction network
ahoward/forkoff
brain-dead simple parallel processing for ruby
cc2qe/vawk
An awk-like VCF parser
brentp/bsub
python wrapper to submit jobs to bsub (and later qsub)
jandot/ruby-ensembl-api
A ruby API to the Ensembl database
jandot/bioclojure
Seed of a bioclojure library
ezmobius/ez-where
query/conditions builder for ActiveRecord and other ORMS
jandot/bio-graphics
Bio::Graphics is a ruby library for visualizing annotations on chromosomes
jeremymcrae/clinical-filter
filtering trio-based genetic variants in VCFs for clinical review
jesserod/vcfruby
pgriess/pyblast
Run NCBI BLAST with an easy-to-use Pythonic wrapper
asifrim/ruby-hilbert
Generates hilbert curve coordinates for the n-th order
csw/bioruby-bgzf
BGZF compression/decompression for Ruby
jeremymcrae/recessiveStats
repository for analysis of recessive genes
asifrim/bio-graphics-processing
BioRuby Bio-Graphics port which uses Processing as a graphics engine
asifrim/bio-graphics
Bio::Graphics is a ruby library for visualizing annotations on chromosomes
asifrim/bioclojure
Seed of a bioclojure library
asifrim/ruby-ensembl-api
A ruby API to the Ensembl database