Pinned Repositories
ariba
Antibiotic Resistance Identification By Assembly
Artemis
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
assembly_improvement
Bio-AutomatedAnnotation
Perl module to take in an genomic assembly and produce annoation
Bio-ENA-DataSubmission
Bio-HICF-Schema
Bio-InterProScanWrapper
Bio-Metadata-Validator
Validate a genome metadata manifest against a checklist
Bio-RetrieveAssemblies
Bio-RNASeq
The new Sanger Pathogen Informatics RNA Seq analysis pipeline
aslett1's Repositories
aslett1/ariba
Antibiotic Resistance Identification By Assembly
aslett1/Artemis
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
aslett1/Bio-AutomatedAnnotation
Perl module to take in an genomic assembly and produce annoation
aslett1/Bio-ENA-DataSubmission
aslett1/Bio-HICF-Schema
aslett1/Bio-InterProScanWrapper
aslett1/Bio-Metadata-Validator
Validate a genome metadata manifest against a checklist
aslett1/Bio-RetrieveAssemblies
aslett1/Bio-RNASeq
The new Sanger Pathogen Informatics RNA Seq analysis pipeline
aslett1/Bio-TypingGenerator
aslett1/Bio-VertRes-Config
aslett1/BioPericles
A work in progress. BioPericles is designed to use supervised Machine Learning techniques to classify samples into clusters
aslett1/bowtie2
bowtie2 test docker
aslett1/circlator
A tool to circularize genome assemblies
aslett1/citation_reporter
Website to show your team's publications (which are in PubMed)
aslett1/concordance
aslett1/deployment
aslett1/GeneDB
Web front-end for genomic data, developed at the Pathogen Genomics group, Wellcome Trust Sanger Institute
aslett1/HICF_checklist
aslett1/json2email
Takes a jinja2 template and some json and sends an email
aslett1/MIDAS
Front end for the HICF pathogen genome store
aslett1/mlst_check
aslett1/pathogens-vm
To build a virtual machine with some Sanger pathogens software installed
aslett1/PathPipeConfTools
Outputs details of all of the pathogen jobs in the pipeline
aslett1/pipelines_reporting
aslett1/project-track
Track information about sequencing projects using ecap database
aslett1/QUASR
aslett1/reference_track
aslett1/setup_tracking
setup a vrtracking pipeline
aslett1/snp_sites
Finds SNP sites from a multi fasta alignment file