asntech
Computational biologist interested in gene regulation, machine learning, regulatory genomics and epigenomics
Stanford UniversityPalo Alto, California
Pinned Repositories
format-free-journals
List of journals which allow format-free initial submissions
improse
Integrated workflow to predict super-enhancers and compute feature importance
intervene
Intervene: a tool for intersection and visualization of multiple genomic region and gene sets
intervene-shiny
An interactive Shiny App for UpSet plots, Venn diagrams and Pairwise heatmaps
jaspar
Source code for JASPAR web portal and REST API
postdoc-funding-schemes
Funding schemes and travel grant opportunities for postdocs
pyjaspar
pyJASPAR: A Pythonic interface to JASPAR transcription factor motifs
QDNAseq.hg38
QDNAseq bin annotation for hg38
RandomLuck
RandomLuck: a totally random winner picker
bioconda-recipes
Conda recipes for the bioconda channel.
asntech's Repositories
asntech/intervene
Intervene: a tool for intersection and visualization of multiple genomic region and gene sets
asntech/pyjaspar
pyJASPAR: A Pythonic interface to JASPAR transcription factor motifs
asntech/QDNAseq.hg38
QDNAseq bin annotation for hg38
asntech/format-free-journals
List of journals which allow format-free initial submissions
asntech/bios259-w24
Course material for BIOS259: The Art of Reproducible Science - A Hands-on Approach
asntech/scg-compute-cost-monitor
asntech/2024-04-25-rutgers
Genomics Carpentries Workshop at Rutgers University, April 25-26, 2024
asntech/2024-05-31-stanford-online
https://asntech.github.io/2024-05-31-stanford-online
asntech/AmpliconClassifier
Classify output of AmpliconArchitect to detect types of focal amplifications present
asntech/asntech
asntech/bioconda-recipes
Conda recipes for the bioconda channel.
asntech/bioinfo-essential-scripts
asntech/biopython
Official git repository for Biopython (originally converted from CVS)
asntech/cloud-genomics
Introduction to Cloud Computing for Genomics
asntech/DAS_Meta-analysis
asntech/datacarpentry.github.io
Data Carpentry website
asntech/dbsuper
asntech/ECRCentral
A central platform for early career researchers
asntech/facets-suite
Utility functions for FACETS
asntech/iC10
:exclamation: This is a read-only mirror of the CRAN R package repository. iC10 — A Copy Number and Expression-Based Classifier for Breast Tumours
asntech/iC10TrainingData
iC10TrainingData — Training Datasets for iC10 Package
asntech/ith.Variant
pipeline for calling somatic variants from multi-sampled genomic sequencing data
asntech/OptiType
Precision HLA typing from next-generation sequencing data
asntech/organization-genomics
Project Organization and Management for Genomics
asntech/resources
Documentation and tutorials worth sharing.
asntech/semester-biology
Forkable teaching materials for course on working with data in R
asntech/ShatterSeek
asntech/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
asntech/workflows
Community maintained workflows & tools (with examples)
asntech/wrangling-genomics
Data Wrangling and Processing for Genomics