DynaSim-compatible mechanism files for simulation of the cortex of (Ching et al., 2012).
Adding these mechanism files and associated functions into where you keep your
mechanism files for DynaSim, e.g.
/your/path/to/dynasim/models
, should enable you to simulate the computational
cortex from:
Ching S, Purdon PL, Vijayan S, Kopell NJ, Brown EN. A
neurophysiological-metabolic model for burst suppression. Proceedings of
the National Academy of Sciences. 2012;109: 3095–3100.
doi:10.1073/pnas.1121461109
This is NOT intended as a bit-perfect reproduction of the original model, but rather just an open-source, adequate reproduction of the overall qualitative results.
The easiest way to get started with this is:
- Install DynaSim (https://github.com/DynaSim/DynaSim/wiki/Installation), including adding it to your MATLAB path.
- Run
git clone https://github.com/asoplata/dynasim-ching-2012-model
or download this code's repo (https://github.com/asoplata/dynasim-ching-2012-model) into'/your/path/to/dynasim/models'
, i.e. the'models'
subdirectory of your copy of the DynaSim repo. - Start MATLAB, and run the main runscript
runCH12model.m
.
- Ching S, Purdon PL, Vijayan S, Kopell NJ, Brown EN. A neurophysiological-metabolic model for burst suppression. Proceedings of the National Academy of Sciences. 2012;109: 3095–3100. doi:10.1073/pnas.1121461109