asoplata
Postdoctoral Researcher at the EPFL-Blue Brain Project, simulating the thalamus. He/him. PhD in Computational Neuroscience.
EPFL, Blue Brain ProjectGeneva, Switzerland
Pinned Repositories
bin
Simple bash scripts that are useful
dissertation
Custom MATLAB code for figure generation of my Dissertation, Chapter 2
DynaSim
DynaSim toolbox for modeling and simulating dynamical systems
dynasim-benchmark-brette-2007
DynaSim code and mechanisms for benchmarking to (Brette et al. 2007)
dynasim-extended-benita-model
DynaSim mechanism files for simulating thalamically-extended (Benita et al., 2012) Slow Wave model
dynasim-krishnan-2016-model
DynaSim mechanism files for reproduction of (Krishnan et al., 2016)
open-computational-neuroscience-resources
A publicly-editable collection of open computational neuroscience resources
open-science-resources
A publicly-editable collection of open science resources, including tools, datasets, meta-resources, etc.
propofol-coupling-2017-full
Complete DynaSim code for reproduction of (Soplata et al., 2017)
propofol-coupling-2017-mechanisms
DynaSim mechanism files for reproduction of (Soplata et al., 2017)
asoplata's Repositories
asoplata/open-computational-neuroscience-resources
A publicly-editable collection of open computational neuroscience resources
asoplata/open-science-resources
A publicly-editable collection of open science resources, including tools, datasets, meta-resources, etc.
asoplata/propofol-coupling-2017-full
Complete DynaSim code for reproduction of (Soplata et al., 2017)
asoplata/bin
Simple bash scripts that are useful
asoplata/DynaSim
DynaSim toolbox for modeling and simulating dynamical systems
asoplata/dynasim-krishnan-2016-model
DynaSim mechanism files for reproduction of (Krishnan et al., 2016)
asoplata/dynasim-extended-benita-model
DynaSim mechanism files for simulating thalamically-extended (Benita et al., 2012) Slow Wave model
asoplata/asoplata
My GitHub Frontpage
asoplata/asoplata.github.io
Code for Austin Soplata's website:
asoplata/asoplata_github_io_redo
FUTURE Code for Austin Soplata's website
asoplata/atlas-direction-vectors
Tools to compute direction vectors in the context of brain atlases.
asoplata/atlas-placement-hints
Tools to compute placement hints in the context of brain atlases.
asoplata/bmtk
Brain Modeling Toolkit
asoplata/ca1
ca1 repository from 2017, linked to Open Source Brain
asoplata/Case-Studies-Python
An introduction to the practicing neuroscientist to data analysis in Python
asoplata/dynasim-bazhenov-2002-model
DynaSim implementation of the (Bazhenov, et al. 2002) thalamocortical model
asoplata/dynasim-benita-2012-model
DynaSim implementation of the (Benita et al., 2012) cortical model
asoplata/dynasim-ching-2012-model
DynaSim implementation of the (Ching et al., 2012) model
asoplata/maurice-2004
Copy of (Maurice et al., 2004) code from ModelDB
asoplata/mopet
The mildly ominous parameter exploration toolkit 🛵 - Run huge simulations on distributed clusters, because why not? 🤯
asoplata/netpyne
A python package to facilitate the development, parallel simulation, optimization and analysis of multiscale biological neuronal networks in NEURON.
asoplata/nmodl
Code Generation Framework For NEURON MODeling Language
asoplata/nrn
NEURON Simulator. (iv required for the GUI)
asoplata/org-to-markdown
Scripts for using Pandoc to convert Emacs Org-mode files to GitHub-Flavored Markdown
asoplata/penumbra-theme
Emacs color theme based on penumbra scheme
asoplata/PFC_models
asoplata/sonata
Collaboration between BBP and AIBS
asoplata/soplata-2023-thalcort-code
asoplata/sumatra
asoplata/ya-pandoc-template
Yet Another Pandoc Template - a very simple system for quick cross-format Pandoc translation