atfrank

atfrank's Stars

• parrt/dtreeviz

  A python library for decision tree visualization and model interpretation.

  Language:Jupyter Notebook3k46208337

• Discngine/fpocket

  fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. The platform is suited for the scientific community willing to develop new scoring functions and extract pocket descriptors on a large scale level. fpocket is distributed as free open source software. If you are interested in integrating fpocket in an industrial setting and require official support, please contact Discngine (www.discngine.com).

  Language:C3102712162

• pengxingang/Pocket2Mol

  Pocket2Mol: Efficient Molecular Sampling Based on 3D Protein Pockets

  Language:Python27594072

• pb3lab/ibm3202

  Google Colab Tutorials for IBM3202

  Language:Jupyter Notebook25214586

• philipperemy/cond_rnn

  Conditional RNNs for Tensorflow / Keras.

  Language:Python225114132

• alexarnimueller/som

  Self organizing Kohonen map in Python with periodic boundary conditions

  Language:Python1364846

• PDBeurope/arpeggio

  Calculation of interatomic interactions in molecular structures

  Language:Python8271320

• hendrixlab/bpRNA

  bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure

  Language:Perl442010

• marcellszi/rna3db

  A dataset for training and benchmarking deep learning models for RNA structure prediction

  Language:Python44397

• tekpinar/correlationplus

  A Python package to calculate, visualize and analyze correlation maps of proteins.

  Language:Jupyter Notebook39488

• tdgrant1/denss

  Calculate electron density from a solution scattering profile

  Language:Python3171422

• n-szulc/fingeRNAt

  Software for detecting non-covalent interactions formed within complexes of nucleic acids with ligands.

  Language:Python28227

• hmdlab/raptgen

  Language:Python24105

• KULL-Centre/DEERpredict

  Software for the prediction of DEER and PRE data from conformational ensembles.

  Language:Jupyter Notebook12533

• ToruNiina/afmize

  generate pseudo-AFM image file from structure file

  Language:C++12475

• filipsPL/fingernat-pymol-plugin

  PyMOL plugin to visualize interactions detected by the fingeRNAt program

  Language:Python4400