Pinned Repositories
connectedreads
a machine-learning optimized long-range genome analysis workflow for next-generation sequencing
deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
deepvariant-on-spark
DeepVariant-on-Spark is a germline short variant calling pipeline that runs Google DeepVariant on Apache Spark at scale.
graphseq
String Graph Construction on Spark
hail
Scalable genomic data analysis.
sample-sheet
Parse Illumina sample sheets with Python
seqslab-docs-operator-pipeline-api
API docs for SeqsLab operator pipeline in distributed workflow execution
spark-operator
Kubernetes operator for managing the lifecycle of Apache Spark applications on Kubernetes.
sparklyr
R interface for Apache Spark
superset
Apache Superset is a Data Visualization and Data Exploration Platform
ATGENOMIX's Repositories
atgenomix/deepvariant-on-spark
DeepVariant-on-Spark is a germline short variant calling pipeline that runs Google DeepVariant on Apache Spark at scale.
atgenomix/graphseq
String Graph Construction on Spark
atgenomix/connectedreads
a machine-learning optimized long-range genome analysis workflow for next-generation sequencing
atgenomix/deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
atgenomix/hail
Scalable genomic data analysis.
atgenomix/assets
atgenomix/cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
atgenomix/JSON-schemas
JSON schemas for genomics and health data exchange and forms
atgenomix/sample-sheet
Parse Illumina sample sheets with Python
atgenomix/seqslab-api-reference
SeqsLab REST API YAML files for docs.atgenomix.com
atgenomix/seqslab-connector
SeqsLab cluster and data lakehouse connector for Python
atgenomix/seqslab-docs-operator-pipeline-api
API docs for SeqsLab operator pipeline in distributed workflow execution
atgenomix/seqslab-operators
Atgenomix Operators are SeqsLab platform plugins and open-source Cromwell extensions that streamline heterogeneous data integration and transformation, and scale complex workflow tasks, using distributed computing clusters and GPU accelerators.
atgenomix/spark-operator
Kubernetes operator for managing the lifecycle of Apache Spark applications on Kubernetes.
atgenomix/sparklyr
R interface for Apache Spark
atgenomix/superset
Apache Superset is a Data Visualization and Data Exploration Platform
atgenomix/support
atgenomix/workflow-execution-service-schemas
The WES API is a standard way to run and manage portable workflows.
atgenomix/shinyapps
Shiny apps on Atgenomix SeqsLab