BF_Lau_challengeproject_2020
Bioinformatics PhD Challenge Project 2020-2021, mentored by Nelson Lau
Description of contents
aubrey_chalproj consists of code written by Aubrey Odom (R/bash)
area_under_curve consists of code written by Nate Borders
File functions
aubrey_chalproj
new_curves.Rmd aubrey_script.Rmd create_rankings_template.R MLR.Rmd rawdata_plots pipeline_files Downsampling CSV_files
area_under_curve
How to run
Bash scripts (.sh): In command line R markdown: In R studio (and usually run chunk by chunk, as needed) Python: Jupyter notebook or in terminal
Dependencies
R scripts: See "libraries" and install packages Bash scripts: Modules should be available on the SCC Jupyter notebook: