aubreyodom

16SBenchmarking

Files for the Faits et al. 16S pipeline benchmarking paper

aubreyodom.github.io

Docs for personal research website

BF_Lau_challengeproject_2020

Bioinformatics PhD Challenge Project 2020-2021, mentored by Nelson Lau

cs506

cs506 class materials - fall 2021

FAFI-microbiome

Code and resources for the paper "Analysis of nasopharyngeal microbiome patterns in Zambian infants with fatal acute febrile illness"

geepack

Generalized Estimating Equations

genbankr_copy

MetaScope

An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)

TBSignatureProfiler

Profile RNA-seq data using published TB gene signatures

TBSignatureProfiler-docs

A repository to host the files for the TBSignatureProfiler website.

aubreyodom/16SBenchmarking

Files for the Faits et al. 16S pipeline benchmarking paper

aubreyodom/BF_Lau_challengeproject_2020

Bioinformatics PhD Challenge Project 2020-2021, mentored by Nelson Lau

aubreyodom/aubreyodom.github.io

Docs for personal research website

aubreyodom/cs506

cs506 class materials - fall 2021

aubreyodom/FAFI-microbiome

Code and resources for the paper "Analysis of nasopharyngeal microbiome patterns in Zambian infants with fatal acute febrile illness"

aubreyodom/geepack

Generalized Estimating Equations

aubreyodom/genbankr_copy

aubreyodom/ggplot2_lesson

A 50 minute tutorial on ggplot2.

aubreyodom/HIV_Exposed_Infants

Data, code, and figures for the HIV-exposed Zambian infant NP microbiome paper

aubreyodom/MetaIndices

A curated collection of Rsubread refseq library indices for usage with the MetaScope package.

aubreyodom/MetaScope

An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)

aubreyodom/NSI-data

Data for Anderson et al. (2020)

aubreyodom/programming-workshops

Materials for the BRITE-REU programming workshops

aubreyodom/singlecellPTX

Analysis code for PTX single cell analysis in mice

aubreyodom/TB_pangenome_scripts

Scripts for the Chitale et al. MTb pangenome paper (2023)

aubreyodom/TBSignatureProfiler

Profile RNA-Seq Data Using TB Pathway Signatures

aubreyodom/vkola-lab-docs

Knowledge base for the Kolachalama lab

aubreyodom/vkola-lab.github.io

Kolachalama laboratory

aubreyodom/ZIS_Data

Repository holding data for the Zambian Infant Studies analyzed by the Johnson Lab