Pinned Repositories
bioinformatics-hacks
Scripts for miscelleneous bioinformatics tasks
catsay
:cat: :computer: like cowsay but cats
domain-name-generator
generat.es clev.er sho.rt doma.in nam.es
memelicious
Parser of internet memes
miseq-16S-pipeline
HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq
smalldata
Small(-ish) datasets for fun and teaching
stitch
Overlap assembler of paired-end DNA sequences generated by Illumina
taxcollector
16S rRNA database
taxonomy-time-machine
NCBI Taxonomy History Browser
tbl2asn-forever
Use tbl2asn forever by pretending that it's still 2019
audy's Repositories
audy/catsay
:cat: :computer: like cowsay but cats
audy/dotflies
~ bleep bloop
audy/esrapgra
The opposite of argparse
audy/ncbi-taxonomy-bot
Bot that toots when NCBI updates their taxonomy database
audy/deskclean
Keep your ~/Desktop tidy!
audy/telegram-bot
:robot: :phone: it's a me! telegram bot!
audy/tree-of-life
:deciduous_tree: API for NCBI taxonomic lineages
audy/downloads
:floppy_disk: Happy file downloading for Python
audy/klotzbot
IRC bot that logs
audy/audy
audy
audy/audy.github.io
my site / blog
audy/bio-xl
Tools for dealing with large (> memory) collections of nucleotide sequences
audy/learning-rust
ich lerne Rust
audy/mashtree
:deciduous_tree: Create a tree using Mash distances
audy/plottery
Procedurally Generated Pottery
audy/rust-musl-builder
Docker images for compiling static Rust binaries using musl-libc and musl-gcc, with static versions of useful C libraries. Supports openssl and diesel crates.
audy/sars-cov-2
SARS-CoV-2 variant calling and consensus assembly pipeline
audy/taxonomy-time-machine
NCBI Taxonomy History Browser
audy/homebrew-bio
:beer::microscope: Bioinformatics formulae for the Homebrew package manager (macOS and Linux)
audy/mag
Assembly and binning of metagenomes
audy/needletail
Fast FASTX parsing and k-mer methods in Rust
audy/nextflow-demo-barebones
Nextflow pipeline w/ modules sans nf-core
audy/nextflow-hello-world
audy/nf-core-demo
audy/obsidian-periodic-notes
Create/manage your daily, weekly, and monthly notes in Obsidian
audy/onecodex
Command line interface and Python client library for the One Codex API
audy/pb-metagenomics-tools
Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics
audy/rust-libgpod
Access iPod database using Rust
audy/science-vessel
Explorer reporting 🛸
audy/snakemake-hello-world
(demo) Minimal working map-reduce pattern in Snakemake (with containerization)