Pinned Repositories
ACSNMineR
R package for enrichment/depletion analysis of ACSN maps and gmt files
auranic.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
BiNoM
BIODICA
"Independent Component Analysis of BIg Omics Data"
BroadCellLine_scRNASeq_analysis
cd2sbgnml
Translation between CellDesigner-flavoured SBML and SBGN-ML
ClinTrajan
Finding trajectories, bifurcations and quantifying pseudotime in large clinical datasets
Elastic-principal-graphs
Matlab implementation of the Elastic Principal Graphs (ElPiGraph) method
FisherSeparabilityAnalysis
Data point cloud separability analysis based on linear Fisher discriminants
VDAOEngine
Java library for unsupervised data analysis methods, including modifications and extensions of PCA such as ICA, principal manifolds and graphs
auranic's Repositories
auranic/ClinTrajan
Finding trajectories, bifurcations and quantifying pseudotime in large clinical datasets
auranic/Elastic-principal-graphs
Matlab implementation of the Elastic Principal Graphs (ElPiGraph) method
auranic/FisherSeparabilityAnalysis
Data point cloud separability analysis based on linear Fisher discriminants
auranic/BroadCellLine_scRNASeq_analysis
auranic/auranic.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
auranic/BiNoM
auranic/BIODICA
"Independent Component Analysis of BIg Omics Data"
auranic/CellCycleTrajectory_SegmentModel
auranic/DANN
Keras implementation of Domain-Adversarial Training of Neural Networks (DANN)
auranic/DANN_pytorch_test
auranic/deep_fuzzy_elpigraph
Deep Fuzzy ElPiGraph : compute embedding of principal graphs in latent spaces, using PyTorch
auranic/ElPiGraph.P
Python implementation of the Elastic Principal Graph algorithm with multi-cpu and gpu support
auranic/EwingSingleCellDataAnalysis
Code accompanying the manuscript "Transcriptional programs define intratumoral heterogeneity of Ewing sarcoma at single cell resolution"
auranic/exact-stoch-log-mod
ExaStoLog: a MATLAB toolbox for EXAct calculation of STOchastic LOGical models
auranic/GETools
Utilities for analysing gene expression data
auranic/HACK
Hierarchical approach to Stabilised Independent Component Analysis
auranic/Intrinsic-Transcriptome-Dimension
Computational methodology for estimating the intrinsic dimensionality of transcriptomic data, including single cell RNASeq data
auranic/lab-agile-planning
his repository contains the lab for agile planning
auranic/LizardBrain
LizardBrain - structure of a data point cloud which is locally simple, globally complex
auranic/Logical_modelling_pipeline
Repository of the pipeline of computational methods for logical modelling of biological networks that are deregulated in diseases, developed by the Computational Systems Biology of Cancer group in Bioinformatics Laboratory of Institut Curie (Paris)
auranic/MaBoSS-env-2.0
MaBoSS is a C++ software for simulating continuous/discrete time Markov processes, applied on a Boolean network.
auranic/micro-scgpt
A prototype GPT model for single-cell data
auranic/NaviCell
A web tool for exploring large maps of molecular interactions
auranic/PhysiBoSS
Multiscale simulation of multi-cellular system
auranic/ProteinTranslationModels
Basic, simple and extendable modeling of protein synthesis
auranic/schubness
auranic/scikit-dimension
A Python package for intrinsic dimension estimation
auranic/scycle
Cell cycle pseudotime in single-cell RNA-seq
auranic/transmorph
Optimal transport-based data integration
auranic/WebMaBoSS
A web interface for MaBoSS modeling