Pinned Repositories
amoebae
Workflow for identifying and classifying homologous gene/protein sequences
Bismark
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
BSVF
Bisulfite Sequencing Virus integration Finder
clinker
Gene cluster comparison figure generator
demo2-github
An example for students of BIOS606
gatk
Official code repository for GATK versions 4 and up
igv-reports
Python application to generate self-contained igv.js pages that can be opened within a browser with "file" protocol.
intervene
Intervene: a tool for intersection and visualization of multiple genomic region and gene sets
MetaOmGraph
MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets
methpipe
A pipeline for analyzing DNA methylation data from bisulfite sequencing.
avkermanov's Repositories
avkermanov/amoebae
Workflow for identifying and classifying homologous gene/protein sequences
avkermanov/Bismark
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
avkermanov/BSVF
Bisulfite Sequencing Virus integration Finder
avkermanov/clinker
Gene cluster comparison figure generator
avkermanov/demo2-github
An example for students of BIOS606
avkermanov/gatk
Official code repository for GATK versions 4 and up
avkermanov/igv-reports
Python application to generate self-contained igv.js pages that can be opened within a browser with "file" protocol.
avkermanov/intervene
Intervene: a tool for intersection and visualization of multiple genomic region and gene sets
avkermanov/MetaOmGraph
MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets
avkermanov/methpipe
A pipeline for analyzing DNA methylation data from bisulfite sequencing.
avkermanov/MONOD2
MONOD2 is a toolkit for methylation haplotype analysis of bisulfite sequencing data
avkermanov/nature_bash
Example scripts demonstrating science at the command line.
avkermanov/NuMetWG
avkermanov/Pieces_of_code_for_bioinformatics
avkermanov/Plant-Virus-Detection-Pipeline
PVDP is an open source tool for the identification of plant viruses in RNA-seq data. This project was funded by Fondo de Ciencia, Tecnología e Innovación del Sistema General de Regalías del Departamento de Antioquia under grant 1101-805-62787 (Convenio No. 4600007658-779) and executed with the participation of Universidad Nacional de Colombia sede Medellín, Universidad CES and Fedepapa. The project was supervised by Secretaria de Agricultura de Antioquia and Ministerio de Ciencia, Tecnología e Innovación de Colombia.
avkermanov/PyWGCNA
PyWGCNA is a Python package designed to do Weighted correlation network analysis (WGCNA)
avkermanov/RNA-Seq-Model-Organism-plant
avkermanov/rnaseq
Fast RNAseq pipeline
avkermanov/shournal
A (file-) journal for your shell
avkermanov/statannotations
add statistical significance annotations on seaborn plots. Further development of statannot, with bugfixes, new features, and a different API.
avkermanov/SwiftOrtho
A high performance tool to identify orthologs and paralogs across genomes.
avkermanov/telescope
Quantification of transposable element expression using RNA-seq