avkermanov

avkermanov's Stars

• chaidiscovery/chai-lab

  Chai-1, SOTA model for biomolecular structure prediction

  Language:Python1.2k149

• nedaemami/AptaNet

  AptaNet as a Deep Learning approach for Aptamer-Protein Interaction Prediction

  Language:Python249

• martinpacesa/BindCraft

  User friendly and accurate binder design pipeline

  Language:Jupyter Notebook24951

• yingliu20/RBP-ADDA

  Language:Python1

• ewels/Labrador

  A web based tool to manage and automate the processing of publicly available datasets.

  Language:PHP399

• mlbendall/telescope

  Quantification of transposable element expression using RNA-seq

  Language:Python6316

• oushujun/EDTA

  Extensive de-novo TE Annotator

  Language:Perl34673

• clemgoub/TE-Aid

  Annotation helper tool for the manual curation of transposable element consensus sequences

  Language:R446

• JiekaiLab/scDIOR

  scDIOR: Single cell data IO softwaRe

  Language:HTML13111

• TaylorResearchLab/scedar

  Single-cell exploratory data analysis for RNA-Seq

  Language:Python399

• bpucker/RNA-Seq_analysis

  scripts for RNA-Seq analysis

  Language:Python269

• scverse/scanpy

  Single-cell analysis in Python. Scales to >1M cells.

  Language:Python1.9k599

• theislab/single-cell-tutorial

  Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

  Language:Jupyter Notebook1.4k457

• Dfam-consortium/TETools

  Dfam Transposable Element Tools Docker container.

  Language:Perl8417

• KerryAM-R/ggVolcanoR

  Language:R122

• kokitsuyuzaki/metaSeq

  Meta-analysis package for RNA-seq count data

  Language:R61

• developerpiru/BEAVR

  BEAVR: A Browser-based tool for the Exploration And Visualization of RNAseq data

  Language:R2311

• pblumenkamp/GenExVis

  An application for exploring and visualizing differential gene expression data created with DESeq2

  Language:Vue10

• easygsea/eVITTA

  eVITTA: an easy Visualization and Inference Toolbox for Transcriptome Analysis

  Language:R121

• gecko984/supervenn

  supervenn: precise and easy-to-read multiple sets visualization in Python

  Language:Python31923

• djhn75/RNAEditor

  Language:Python1415

• dmnfarrell/smallrnaseq

  small rna-seq analysis package

  Language:Python2919

• rajewsky-lab/mirdeep2

  Discovering known and novel miRNAs from small RNA sequencing data

  Language:Perl13749

• owkin/HE2RNA_code

  Train a model to predict gene expression from histology slides.

  Language:Python9437

• ndaniel/fusioncatcher

  Finder of Somatic Fusion Genes in RNA-seq data

  Language:Python14167

• debbiemarkslab/EVcouplings

  Evolutionary couplings from protein and RNA sequence alignments

  Language:Jupyter Notebook23776

• a2iEditing/RNAEditingIndexer

  A tool for the calculation of RNA-editing index for RNA seq data

  Language:Makefile3718

• likelet/LncPipe

  A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets

  Language:Groovy8343

• ViennaRNA/ViennaRNA

  The ViennaRNA Package

  Language:C30278

• nf-core/rnafusion

  RNA-seq analysis pipeline for detection of gene-fusions

  Language:Nextflow14194