awohns

Statistical Genetics Researcher at Stanford School of Medicine

Stanford University School of MedicineStanford, CA

Pinned Repositories

109-Final-Project
CS109
Language:HTML00
2015lab1
Language:Shell00
2015lab2
00
5primeutr
Language:R00
adding-species-manuscript
manuscript materials for the adding species paper
Language:HTML00
ldgm
Software for linkage disequilibrium graphical models
Language:MATLAB14 3 110
ldgm_paper
Code for the LDGM paper.
Language:MATLAB1 1 00
tree-sequence-phyloseminar
Jupyter notebook to accompany tree sequence fundmentals phyloseminar
Language:Jupyter Notebook12
tspyro
Joint inference of geography and time using Pyro and tree sequences
Language:Jupyter Notebook41
unified_genealogy_paper
A Unified Genealogy of Modern and Ancient Humans
Language:Python18 3 178

awohns's Repositories

awohns/unified_genealogy_paper
A Unified Genealogy of Modern and Ancient Humans
Language:Python18 3 178
awohns/ldgm
Software for linkage disequilibrium graphical models
Language:MATLAB14 3 110
awohns/tspyro
Joint inference of geography and time using Pyro and tree sequences
Language:Jupyter Notebook41
awohns/ldgm_paper
Code for the LDGM paper.
Language:MATLAB1 1 00
awohns/tree-sequence-phyloseminar
Jupyter notebook to accompany tree sequence fundmentals phyloseminar
Language:Jupyter Notebook12
awohns/109-Final-Project
CS109
Language:HTML00
awohns/5primeutr
Language:R00
awohns/adding-species-manuscript
manuscript materials for the adding species paper
Language:HTML00
awohns/aneurysm_genetics
Analysis and figures for aneurysm genetics project
0 2 00
awohns/appendix
00
awohns/appendix_2
Damage Plots for St John's Samples.
awohns/firefly
Language:JavaScript
awohns/gdf5_tsinfer
Language:Jupyter Notebook
awohns/height
Language:Shell2 0
awohns/msprime
Simulate genealogical trees and genomic sequence data using population genetic models
Language:Python
awohns/neolithic-tsinfer
Run modern descendants analysis for "Kinship and burial in a late Neolithic Cambridgeshire site"
Language:Jupyter Notebook2 0
awohns/networkx
Network Analysis in Python
Language:Python1 0
awohns/relative-allele-age
Code for relative allele age work and transfer report
Language:Jupyter Notebook
awohns/roman_britain
awohns/selection
Language:Python
awohns/selection_v4
Language:Shell
awohns/simulatingcasecontroldata
Language:Jupyter Notebook
awohns/stdpopsim
A library of standard simulation models for msprime
Language:Python
awohns/treeseq-inference
Work for the tree sequence inference paper.
Language:Python2 0
awohns/tsinfer
Infer a tree sequence from genetic variation data
Language:Python
awohns/tsinfer-benchmarking
Language:Jupyter Notebook1 0
awohns/tskit
The tree sequence toolkit
Language:Python
awohns/unified_genealogy
Language:HTML
awohns/what-is-an-arg-paper
Manuscript and code for the "What is an ARG?" paper
Language:TeX0 0
awohns/withrsid
Language:R