awohns/unified_genealogy_paper

Issues

• Generalization of tgp_chr20.trees rule to other chromosomes fails

  #40 opened 2 years ago by lukashuebner
  0

• error: subprocess-exited-with-error. I just downloaded the latest version of Conda

  #34 opened 2 years ago by jielab
  4

• 3 start-up questions for "make hgdp_tgp_sgdp_high_cov_ancients_chr20.dated.trees"

  #35 opened 2 years ago by jielab
  2

• issue with convert.py

  #32 opened 2 years ago by mxyoyeme
  2

• UnboundLocalError: local variable 'report' referenced before assignment

  #36 opened 2 years ago by jielab
  1

• Re-release an re-dated unified genealogy

  #33 opened 2 years ago by hyanwong
  0

• Merge Extended Data Figures 3 & 4

  #7 opened 2 years ago by hyanwong
  1

• Re-jig of heatmap

  #8 opened 2 years ago by hyanwong
  20

• Remove link to /home/jk/ in analyze_data.py

  #12 opened 2 years ago by hyanwong
  1

• Recombination maps

  #14 opened 3 years ago by awohns
  0

• List of to-dos

  #2 opened 4 years ago by hyanwong
  2

• Error in msprime Out-of-Africa model

  #1 opened 3 years ago by jeromekelleher
  0

• 1000 Genome Tree script not replicable because of msprime.RateMap

  #25 opened 4 years ago by xinyli
  4

• Ideas for viz

  #17 opened 4 years ago by hyanwong
  0

• Comparing the unified TS against an equivalent VCF

  #16 opened 4 years ago by hyanwong
  0

• What mutation rate to use for dating when there are multiple hits

  #6 opened 4 years ago by hyanwong
  1

• See if applying parsimony to the sites changes the percentage of single mut sites

  #5 opened 4 years ago by hyanwong
  0