ayush9pandey
Faculty member in the Electrical Engineering Department at the University of California, Merced. Ph. D. in Control and Dynamical Systems from Caltech.
University of CaliforniaMerced, CA
Pinned Repositories
ayush-pandey.github.io
AutoReduce
Python based automated model reduction tool for SBML models
BioCRNPyler
A modular compiler for biological chemical reaction networks
bioscrape
BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)
control_ratio_cells
Simulations for bioRxiv paper - Control of density and composition in an engineered two-member bacterial community
integrase-excisionase-characterization
Data and models repository for paper on "Characterization of integrase and excisionase activity in cell-free protein expression system using a modeling and analysis pipeline"
nonlinear_control
Nonlinear control tools in Python (feedback linearization, controllability, etc.)
robustControl
Robust Control System
subsbml
Python package for managing systems and subsystems of SBML models
txtlsim-python
Cell-free simulation toolbox in Python
ayush9pandey's Repositories
ayush9pandey/nonlinear_control
Nonlinear control tools in Python (feedback linearization, controllability, etc.)
ayush9pandey/AutoReduce
Python based automated model reduction tool for SBML models
ayush9pandey/integrase-excisionase-characterization
Data and models repository for paper on "Characterization of integrase and excisionase activity in cell-free protein expression system using a modeling and analysis pipeline"
ayush9pandey/atom
:atom: The hackable text editor
ayush9pandey/BioCRNPyler
A modular compiler for biological chemical reaction networks
ayush9pandey/bioscrape
BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)
ayush9pandey/biosysdesign
Course Webpage for "Introduction to Biological System Design"
ayush9pandey/find-DOA
Python based domain of attraction estimate for nonlinear dynamical systems
ayush9pandey/hvalidation
Hierarchical validation for biological system modeling
ayush9pandey/iwbda_workshop2_data
Data for IWBDA 2021 workshop on Bioscrape and AutoReduce
ayush9pandey/ode_solvers
Benchmarking Python ODE solvers for biological models
ayush9pandey/subsbml
Python package for managing systems and subsystems of SBML models
ayush9pandey/webpage-track
A Github repository that tracks changes and records data for my personal webpage.
ayush9pandey/control_ratio_cells
Simulations for bioRxiv paper - Control of density and composition in an engineered two-member bacterial community
ayush9pandey/txtlsim-python
Cell-free simulation toolbox in Python
ayush9pandey/active2passive
Passive approximations for active systems
ayush9pandey/ayush9pandey
About me
ayush9pandey/bioscrape-edit
BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)
ayush9pandey/BioSIMI
BioSIMI Modeling framework serving for input/output modeling of interconnected biomolecular systems
ayush9pandey/biosysid
Python toolbox for system identification of biological systems.
ayush9pandey/buildacell.github.io
ayush9pandey/control-Perf-Est-Tradeoff
Project on "The tradeoff between observation accuracy and performance in control systems"
ayush9pandey/DACdenoising
Simulation of DAC noise and noise mitigation strategies
ayush9pandey/digital_control
Digital Control class Autumn 2016, IIT Kharagpur
ayush9pandey/interlab-modeling
Modeling of biological circuits developed in the interlab integration study of Build-A-Cell
ayush9pandey/matlab-codes-windows
ayush9pandey/PURE_CRN_models
Contains all Python scripts used to simulate protein expression and plot figures seen in the paper "A chemical reaction network model of PURE" by Zoila Jurado, Ayush Pandey, and Richard M. Murray. Additionally, all simulation runs and experimental results are included.
ayush9pandey/python-control
ayush9pandey/toggle_switch
Python code for nonlinear analysis of toggle switch biological circuit.
ayush9pandey/txtlsim
Cell-free expression modeling toolbox for MATLAB