ayushkarnawat/profit

Issues

• Specify random_state when generating variants

  #116 opened 5 years ago by ayushkarnawat
  0

• Save dataset param

  #115 opened 5 years ago by ayushkarnawat
  0

• "Using tensorflow backend" even when using pytorch models

  #49 opened 5 years ago by ayushkarnawat
  2

• Only pin memory if using CUDA

  #114 opened 5 years ago by ayushkarnawat
  0

• Remove hydrogens when mutating

  #113 opened 5 years ago by ayushkarnawat
  0

• Change frac_val to frac_valid in stratified_splitter

  #110 opened 5 years ago by ayushkarnawat
  0

• Torch version of gaussian process regressor

  #108 opened 5 years ago by ayushkarnawat
  0

• Rename all instances of pytorch -> torch

  #100 opened 5 years ago by ayushkarnawat
  1

• Remove peptide builder

  #105 opened 5 years ago by ayushkarnawat
  0

• Rename channels_format

  #101 opened 5 years ago by ayushkarnawat
  1

• <pad> and <unk> tokens should not be required

  #96 opened 5 years ago by ayushkarnawat
  1

• [Discussion] Should save whole model or just state dict?

  #97 opened 5 years ago by ayushkarnawat
  0

• No values to test in PyTorch VAE model

  #91 opened 5 years ago by ayushkarnawat
  1

• Ignore padding index in negative log likelihood (NLL) loss

  #90 opened 5 years ago by ayushkarnawat
  0

• Reconstructed sequences are poor

  #93 opened 5 years ago by ayushkarnawat
  0

• Negative log likelihood (NLL) loss not decreasing

  #92 opened 5 years ago by ayushkarnawat
  0

• [Trainer] Offload training to trainer class

  #72 opened 5 years ago by ayushkarnawat
  1

• [Visualization] Observe training progress

  #60 opened 5 years ago by ayushkarnawat
  1

• [Preprocessing] One-hot encoding sequences

  #88 opened 5 years ago by ayushkarnawat
  1

• [PyMOL] Verbose mode

  #87 opened 5 years ago by ayushkarnawat
  1

• Performance tests for filetypes

  #51 opened 5 years ago by ayushkarnawat
  3

• Pytorch LSTM Model

  #75 opened 5 years ago by ayushkarnawat
  0

• Stratified splitting on regression labels

  #83 opened 5 years ago by ayushkarnawat
  1

• Unable to load TFRecords file into torch dataset

  #81 opened 5 years ago by ayushkarnawat
  0

• Warning for loading large datasets

  #40 opened 5 years ago by ayushkarnawat
  0

• Unable to train using keras/tf models

  #39 opened 5 years ago by ayushkarnawat
  1

• Use multiple workers to load pytorch datasets

  #54 opened 5 years ago by ayushkarnawat
  1

• Check if all records have same size/shape when loading

  #58 opened 5 years ago by ayushkarnawat
  2

• [RuntimeError] Unable to train EmbeddedGCN model

  #79 opened 5 years ago by ayushkarnawat
  0

• Unable to slice torch dataset(s)

  #73 opened 5 years ago by ayushkarnawat
  1

• Unable to read tfrecords file

  #76 opened 5 years ago by ayushkarnawat
  0

• Tensorflow + PyTorch models don't support channels_last

  #64 opened 5 years ago by ayushkarnawat
  2

• [Callbacks] Early stopping and model checkpoints

  #59 opened 5 years ago by ayushkarnawat
  0

• EarlyStopping callback patience parameter

  #70 opened 5 years ago by ayushkarnawat
  0

• Attempting to train pytorch EmbeddedGCN model

  #68 opened 5 years ago by ayushkarnawat
  2

• Change data_format values from channels_first to batch_first

  #65 opened 5 years ago by ayushkarnawat
  0

• PyTorch models?

  #29 opened 5 years ago by ayushkarnawat
  1

• Pytorch GCN model

  #62 opened 5 years ago by ayushkarnawat
  0

• Computing and loading full dataset into memory (very slow)

  #35 opened 5 years ago by ayushkarnawat
  1

• Use example_pb2 instead of tf.train.Example()

  #53 opened 5 years ago by ayushkarnawat
  0

• Computing dataset doesn't support channels_last

  #55 opened 5 years ago by ayushkarnawat
  0

• Improper concatenation of data when loading as numpy array

  #57 opened 5 years ago by ayushkarnawat
  0

• PyTorch dataset doesn't always load dataset in original shape/format

  #50 opened 5 years ago by ayushkarnawat
  1

• Load LMDB/TFRecords file into pytorch datasets

  #48 opened 5 years ago by ayushkarnawat
  1

• Dynamically determine which ML backend to use

  #47 opened 5 years ago by ayushkarnawat
  1

• Incorrect loading of serializing sequence from cache

  #43 opened 5 years ago by ayushkarnawat
  1

• Sequence tokenizer + encoder

  #34 opened 5 years ago by ayushkarnawat
  0

• Serializer abstractions

  #33 opened 5 years ago by ayushkarnawat
  0

• Save data in LMDB format

  #32 opened 5 years ago by ayushkarnawat
  0

• Training + model checkpoints

  #31 opened 5 years ago by ayushkarnawat
  0