Smith-Waterman-algorithm-java-implementation
BioMultithreading
To run the algorithm in a multi-thread fashion. The more CPU cores, the faster it gets.
BioSequential
To run the algorithm in a sequential fashion. Only requires 1 CPU core.
input_Data
Real input data examples.
How to run the program
Check this document for instruction of how to run both programs and use the input data.
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If there are any questions. please do not hesistate to ask. Thank you.