smith-waterman-alignment

kyu999/ssw_aligner

Python implementation of Striped Smith-Waterman Algorithm

shehio/Computational-Biology

mgfzemor/Pairwise-sequence-Aligment-Tool

Pairwise Sequence Aligment Tool (PSAT) a simple application to align sequences.

Enescigdem/SequenceAlignment

Global and Local Sequence Alignment

poke1024/simileco

A header-only templated C++17-library for fast and versatile sequence alignment computations.

Amirreza-Mousavi/Protein_Normalized_SW_Similarity_Score

An R script that calculates a similarity matrix for a list of protein sequences with the aid of Bleakley-Yamanishi Normalized Smith-Waterman Similarity Score.

Howeng98/Smith_Waterman_parallel

Implement parallel Smith Waterman algorithm on CUDA

m-walid/Bioinformatics-Alignment-Algorithms

marco-ruiz/pairwise-sequence-aligner

Applications that compute pairwise alignments of two biological sequences

rameziophobia/bioinformatics-algorithms

implementation and visualizations for sequence alignment algorithms

vanleiko/alignment-web-app

Web App para alinhamento de sequências de DNA

AhmadAymanBahaa/Bioinformatics

Sequence Alignment Algorithms: Dot Matrix Representation, Needleman-Wunsch Algorithm, and Smith-Waterman Algorithm.

assadiab/Smith-waterman

🧬 Implementation of the Smith-Waterman algorithm for aligning amino acid sequences.

azoz158-zz/Smith-Waterman-algorithm-java-implementation

Smith Waterman algorithm Java implementation

GennariAl/Smith-Waterman-with-R

I developed a R package implementing the Smith-Waterman algorithm. The package building, check and installation works smoothly with 0 error (see log_file). BiocCheck results show 1 error because I’m not registered at the support site, 1 warning because BiocViews terms are invalid. Check the log_file for more details.

iamandreatonina/Algorithms_bioinformatics

:computer: Project for the course of Algorithms for Bioinformtics

jeremyButtler/alnSeq

AlnSeq runs a c coded Smith Waterman, Needleman Wunsch, and an Hirschberg. It can run as a standalone or as a library for python.

olledejong/Sequence-Alignment

MSc Biology C++ Course Assignment. A program that can either perform a global, or local sequence alignment. Implementation of the Smith-Waterman and Needleman-Wunsch algorithms.

zhukovanadezhda/smith-waterman

🧬🔍 Smith-Waterman pairwise sequences alignment ✍️🔡

iglee/smith-waterman

Implementation of Smith-Waterman local alignment model- find closest local alignments in two given amino acid sequences. BLOSUM was used as the scoring matrix.

madisonlondon/Nucleotide-Alignment

This program determines the optimal alignment of two nucleotide sequences using the Smith–Waterman algorithm. Optimality, of course, is determined by the values of the gap penalty g and the weight matrix (that lists all of the s(ai , bj )). Finally the program outputs the optimal similarity score along with the optimal alignment.

mcclowes/smith-waterman-alignment

Smith-Waterman alignment implementation

sonechkina/SmithWaterman

R package for global alignment between two genomic sequences