/bioinformatics-algorithms

implementation and visualizations for sequence alignment algorithms

Primary LanguageJavaScript

BioInformatics Algorithms Implementation and visualizatoin

deployed live here

Built with

  • React
  • Heroku

Implemented Algorithms

  • Needleman Wunsch
  • Smith & Waterman
  • Dot plot Matrix
  • Dot plot Matrix with window
  • Maximum Score Matrix

The alignment and alignment score are displayed for the following algorithms

  • Needleman Wunsch
  • Smith & Waterman

screenshots

Inputs

Inputs

Needleman Wunsch, steps navigation

Needleman and Wunsch algorithm

Dot Plot Matrix

Dot Plot matrix

Alignments found

Alignments

Test cases and Examples

Dot plot matrix with window

Dot Plot matrix with window

Needleman Wunsch

Needleman Wunsch example

Smith Waterman

Smith Waterman example

Example with multiple alignments

Smith Waterman example 2