bahlolab/exSTRa

Issues

• Can exSTRa identify STRs in non-human species?

  #88 opened a year ago by z1242099843
  1

• str score error for some loci

  #87 opened 2 years ago by krukanna
  4

• Check for parallel and snow packages, and that random behaviour is appropriate

  #81 opened 2 years ago by trickytank
  2

• check scripts in tools

  #85 opened 2 years ago by trickytank
  0

• error : verbose && p.value.sd < early_A * p_smallest

  #65 opened 3 years ago by wujianming604
  2

• export function that gives the exSTRa plot titles

  #84 opened 2 years ago by trickytank
  0

• fix snow parallel for tsum_test

  #83 opened 2 years ago by trickytank
  0

• exstra_score object 1 sample

  #46 opened 6 years ago by eudesbarbosa
  4

• Check data-raw/ suits new extdata

  #53 opened 6 years ago by trickytank
  0

• exSTRa on .cram file

  #64 opened 2 years ago by ichauchcc
  2

• errors when object is null

  #51 opened 2 years ago by bharatij
  8

• Error: Multiple mates found for read A00202:594:HC5LCDSXY:4:2669:31611:2503

  #62 opened 2 years ago by baoyl818
  2

• DB built with prepare_exSTRa_input_db.R different from repeat_expansion_disorders_hg38.txt.

  #63 opened 2 years ago by rafaelmguedes
  1

• object 'aff_low' not found

  #61 opened 4 years ago by fouadzahdeh
  0

• include known hg38 STR expansion database

  #14 opened 8 years ago by trickytank
  4

• Give minimal exSTRa repeat database example

  #56 opened 5 years ago by trickytank
  0

• Add version check to R/read_exstra_db_known.R

  #55 opened 5 years ago by trickytank
  0

• Documentation with roxygen

  #12 opened 8 years ago by trickytank
  1

• Write wiki for data setup and usage

  #4 opened 7 years ago by trickytank
  1

• Sample names that are numbers causes merging errors in tsum_test

  #29 opened 7 years ago by trickytank
  1

• Limit functions exported

  #3 opened 7 years ago by trickytank
  2

• Errors if no data for locus

  #17 opened 7 years ago by trickytank
  1

• Add Travis CI testing

  #6 opened 7 years ago by trickytank
  3

• Make Perl scripts more usable

  #10 opened 8 years ago by trickytank
  1

• Perl module to new repository for status checks

  #13 opened 8 years ago by trickytank
  2

• ability to read CRAM

  #7 opened 8 years ago by trickytank
  2

• Include known hg19 STR expansion database

  #5 opened 8 years ago by trickytank
  0

• Interactive score plots

  #8 opened 8 years ago by trickytank
  1

• Create test dataset

  #2 opened 8 years ago by trickytank
  1

• Change classes to exSTRa_*

  #1 opened 8 years ago by trickytank
  1