Merge and genotype gvcf from AnchorWave

[baozg]

Hi, @baoxingsong

How do we merge gVCF from MAFToGVCFPlugin from TASSEL? I already see your post in GATK broadinstitute/gatk#7976. Did you have any recommendations for downstream work?

[baoxingsong]

Please try this one https://github.com/baoxingsong/AnchorWave/blob/master/doc/GATK.md

[baozg]

Thanks a lot! I will try it.