baoxingsong/AnchorWave
Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation
C++MIT
Issues
- 6
Merge gVCF
#74 opened by zhengluo-lz - 1
MAF FORMAT
#73 opened by Zhaoqiyue5 - 9
- 4
- 5
Anchorwave large chromosome error
#26 opened by diego-rt - 8
Empty CDS file from gff2seq
#36 opened by nwespe - 2
Chromosome naming for polyploid
#72 opened by SamCT - 2
- 1
- 4
Wrong query postion of inverion in MAF output
#68 opened by baozg - 2
proali error within phg: line 22: 4021905 Floating point exception"${EXE}_sse4.1" "$@
#69 opened by eead-csic-compbio - 1
Can AnchorWave be used for calculating identities of pairwise alignments in whole genome comparisons?
#65 opened by cjchen5 - 13
- 1
- 5
The problem of 'anchorwave proali'
#61 opened by xuxingyubio - 2
The MAF file sizes are unstable in the AnchorWave ProAli genome alignment results
#60 opened by jiaanqiang - 3
Error: could not get output VCF file
#59 opened by Bank-tidy - 3
Proali Core Dumped
#55 opened by conJUSTover - 1
Error: could not parse the input VCF
#56 opened by wangzhx36 - 2
Much slower speed of T2T A.thaliana alignment
#54 opened by baozg - 2
- 2
regex_error in V1.0.1
#37 opened by owensgl - 5
MAFToGVCFPlugin Error
#52 opened by socialhang - 2
Merge and genotype gvcf from AnchorWave
#51 opened by baozg - 3
- 2
- 6
example data core dumped "{EXE}_sse4.1""$@"
#47 opened by HozumiLv - 1
How should I align chromosome regions between distantly evolutionary species?
#48 opened by Rafaelsoler13 - 3
- 2
running proali from custom gff files
#45 opened by aleksicmil - 2
What happened to maf2vcf function?
#44 opened by cizydorczyk - 5
Too many mismatches and could you please give some advice on alignment parameters?
#32 opened by Yutang-ETH - 2
- 7
AnchorWave on a very repetitive plant genome
#33 opened by agolicz - 8
Converting maf to sam
#31 opened by Yutang-ETH - 1
Error in MAFToGVCFPlugin
#42 opened by ccmenard - 1
Lack of understanding of MAF to VCF conversion
#40 opened by Deng-Yuan - 1
Anchorwave ali documentation
#27 opened by diego-rt - 2
Identify Duplication
#38 opened by wyim-pgl - 2
no species name in MAF output
#35 opened by leejimmy93 - 1
Segmentation fault with `genoAli`
#34 opened by aseetharam - 3
- 3
- 1
- 3
- 4
- 2
- 1
example data core dumped
#22 opened by yuanw-18 - 6
Output the anchor without alignment
#21 opened by baozg - 1
fasta headers not read correctly by gff2seq
#19 opened by jessepoland