What happened to maf2vcf function?
cizydorczyk opened this issue · 2 comments
cizydorczyk commented
AnchorWave 1.0.1 had a useful little function for getting a VCF from a maf file: maf2vcf.
What happened to it? Has the functionality been moved elsewhere?
Thanks,
Conrad
baoxingsong commented
We removed this function from the latest version since the BioKotlin team is developing a TASSEL plugin with the same function.
Please check this document https://github.com/baoxingsong/AnchorWave/blob/master/doc/GATK.md
cizydorczyk commented
Understood, thank you for the quick response!