Pinned Repositories
DeltaDihedral
Calculate delta dihedrals as in figure 1 of "A genetically encoded, high-signal-to-noise maltose sensor" Marvin et al 2011.
DeNovoCurvedSheetDesign
This repository contains the files necessary to generate most designs in the 2017 paper "Principles for designing proteins with cavities formed by curved beta sheets"
emtools
Tools for electron microscopy data analysis
NTF2analysis
Scripts for NTF2-like domain structure analysis
NTF2Gen
NTF2Gen: An enumerative algorithm for generating full-atom models of proteins belonging to the NTF2-like superfamily
OligoOverlapOpt
Alternative version of script for overlap optimization from "Multiplex pairwise assembly of array-derived DNA oligonucleotides"
guided_tomo_align
Scripts for using references aligned to particles in 3D subvolumes in Chimera sessions for alignment
documentation
Documentation for Rosetta Applications
pyrosetta_scripts
A place in which scripts developed in PyRosetta can be stored and shared. In the not too distant future, these scripts will be tested along side the main repository to ensure that they continue to work even if we make changes to the interfaces of core classes.
basantab's Repositories
basantab/NTF2Gen
NTF2Gen: An enumerative algorithm for generating full-atom models of proteins belonging to the NTF2-like superfamily
basantab/OligoOverlapOpt
Alternative version of script for overlap optimization from "Multiplex pairwise assembly of array-derived DNA oligonucleotides"
basantab/NTF2analysis
Scripts for NTF2-like domain structure analysis
basantab/DeNovoCurvedSheetDesign
This repository contains the files necessary to generate most designs in the 2017 paper "Principles for designing proteins with cavities formed by curved beta sheets"
basantab/emtools
Tools for electron microscopy data analysis
basantab/DeltaDihedral
Calculate delta dihedrals as in figure 1 of "A genetically encoded, high-signal-to-noise maltose sensor" Marvin et al 2011.