baumgach
Group Leader of the ML in Medical Image Analysis Group @ University of Tübingen.
University of TübingenTübingen, Germany
Pinned Repositories
acdc_segmenter
Public code for our submission to the 2017 ACDC Cardiac Segmentation challenge
artistic-style-transfer
Implementation of the artistic style transfer paper by Gatys et al. using the Lasagne framework.
baumgach.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
image-sorter
Small project for sorting images in a folder into a number of label categories which can be specified by the user.
PHiSeg-code
Tensorflow Code for "PHiSeg: Capturing Uncertainty in Medical Image Segmentation", Proc. MICCAI 2019
ShoreditchBoulderTopo
Topo for the Boulder in Shoreditch Park
SonoNet-weights
Model descriptions and weights for all the variations of the SonoNet for real-time fetal standard scan plane detection.
tue-slurm-helloworld
Instructions and examples to deploy some PyTorch code on slurm using a Singularity Container
vagan-code
Tensorflow implementation of 'Visual Feature Attribution using Wasserstein GANs'
vtkTools
C++ tools for performing various kinds operations on vtk files of brain fibers extracted using Tracography
baumgach's Repositories
baumgach/PHiSeg-code
Tensorflow Code for "PHiSeg: Capturing Uncertainty in Medical Image Segmentation", Proc. MICCAI 2019
baumgach/acdc_segmenter
Public code for our submission to the 2017 ACDC Cardiac Segmentation challenge
baumgach/vagan-code
Tensorflow implementation of 'Visual Feature Attribution using Wasserstein GANs'
baumgach/tue-slurm-helloworld
Instructions and examples to deploy some PyTorch code on slurm using a Singularity Container
baumgach/SonoNet-weights
Model descriptions and weights for all the variations of the SonoNet for real-time fetal standard scan plane detection.
baumgach/image-sorter
Small project for sorting images in a folder into a number of label categories which can be specified by the user.
baumgach/ShoreditchBoulderTopo
Topo for the Boulder in Shoreditch Park
baumgach/artistic-style-transfer
Implementation of the artistic style transfer paper by Gatys et al. using the Lasagne framework.
baumgach/baumgach.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
baumgach/vtkTools
C++ tools for performing various kinds operations on vtk files of brain fibers extracted using Tracography
baumgach/gpu_speed_test
baumgach/scribble_annotator
Basil's MATLAB GUI to read in niifti/HDF5 files and create weak supervision annotations (scribbles)
baumgach/vtk2mask
C++ tools for converting VTK models to masks
baumgach/BackgroundGenerator
Simple class for preprocessing minibatches in a separate background thread
baumgach/basil_scribble_supervision
Basil's internship work on scribble supervision
baumgach/chaksu-classifier
A ResNet for classifying Chaksu into glaucoma suspect and not glaucoma suspect
baumgach/Chexpert
Top 1 solution of Chexpert
baumgach/ddsm-saliency
baumgach/debug-davids-code
baumgach/discriminative_learning_toolbox
baumgach/ged
Efficient implementation of generalised energy distance for samples of 2D (numpy) arrays
baumgach/l2l-example
This is an example for how to prepare a valid submission for the MICCAI L2L Challenge
baumgach/making-better-mistakes
baumgach/midl-openreview-scripts
A number of scripts to access papers and reviews through the Openreview Python API
baumgach/ralis
Code for the paper "Reinforced Active Learning for Image Segmentation"
baumgach/replicate-chexpert-results
baumgach/scribble_segmentation
Yigit's DLMIA scribble segmentation code
baumgach/tue-slurm
Utility for working with Uni Tübingen Slurm Cluster
baumgach/Visual-Feature-Attribution-Using-Wasserstein-GANs-Pytorch
Implementation of Visual Feature Attribution using Wasserstein GANs (VAGANs, https://arxiv.org/abs/1711.08998) in PyTorch