bbfrederick
MR Physicist who took a very wrong turn somewhere in the 80's, and ended up in psychiatry. Director of the Optomagnetic Group in the McLean Hospital BIC.
Pinned Repositories
basecontainer
Unix base container with mamba installed
basecontainer_plus
basecontainer with FSL tools tacked on
capcalc
Various programs for processing and displaying coactivation patterns in fMRI data
cvrprocessing
Code for processing data for grant NS097512
docker-opengl
Docker - Mesa 3D OpenGL Software Rendering (Gallium) - LLVMpipe, and OpenSWR Drivers
dotfiles
My dotfiles
picachooser
A fast lightweight gui tool for sorting components from a MELODIC probabilistic ICA analysis
pysnirf
A python library to read and write SNIRF (standard near infrared files)
rapidtide
rapidtide - a suite of programs for doing time lag correlation analysis on fMRI data
stabilitycalc
Automatic QC processing for fMRI data
bbfrederick's Repositories
bbfrederick/rapidtide
rapidtide - a suite of programs for doing time lag correlation analysis on fMRI data
bbfrederick/picachooser
A fast lightweight gui tool for sorting components from a MELODIC probabilistic ICA analysis
bbfrederick/capcalc
Various programs for processing and displaying coactivation patterns in fMRI data
bbfrederick/stabilitycalc
Automatic QC processing for fMRI data
bbfrederick/pysnirf
A python library to read and write SNIRF (standard near infrared files)
bbfrederick/basecontainer
Unix base container with mamba installed
bbfrederick/basecontainer_plus
basecontainer with FSL tools tacked on
bbfrederick/cvrprocessing
Code for processing data for grant NS097512
bbfrederick/docker-opengl
Docker - Mesa 3D OpenGL Software Rendering (Gallium) - LLVMpipe, and OpenSWR Drivers
bbfrederick/dotfiles
My dotfiles
bbfrederick/fix-container
Containerized version of FSL FIX
bbfrederick/fmriprep
fMRIprep is a functional magnetic resonance image pre-processing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to differences in scan acquisition protocols and that requires minimal user input, while providing easily interpretable and comprehensive error and output reporting.
bbfrederick/gen_mid_regressors
Generate FSL regressors from the output of an EPrime MID run file
bbfrederick/gradunwarp-container
Containerized version of the HCP gradunwarp script
bbfrederick/medwatch
Python code for talking to medwatch
bbfrederick/micscriptlib
Routines to simplify the creation of neuroimaging proc scripts
bbfrederick/nipype
Workflows and interfaces for neuroimaging packages
bbfrederick/niworkflows
Common workflows for MRI (anatomical, functional, diffusion, etc)
bbfrederick/pynirs
Routines for processing NIRS data
bbfrederick/qtpy
Provides an uniform layer to support PyQt5, PyQt4 and PySide with a single codebase
bbfrederick/spikefix
Simple scripts for finding and removing spikes from fMRI datasets
bbfrederick/stable-diffusion-webui-mps
Stable Diffusion web UI
bbfrederick/ukbb_processing
Scripts to redo various parts of the UKBB preprocessing chain