Pinned Repositories
bbgwiki
Website with info of all the tools and data used in the bbglab
boostdm-analyses
Source code to reproduce the figures of the boostDM paper
boostdm-pipeline
Learning pipeline to identify somatic SNVs under positive selection.
cgi-clinics-api
This repository contains python scripts to serve as a guide on how to use the CGI-Clinics API.
hartwig_biomarkers
intogen-plus
a framework for automatic and comprehensive knowledge extraction based on mutational data from sequenced tumor samples from patients.
muts-needle-plot
A needle plot for mutation data
myvariant.info
MyVariant.info: A BioThings API for human variant annotations
openvariant
Read, parse and operate different multiple input file formats with OpenVariant
wok
BBGLab - Barcelona Biomedical Genomics Lab's Repositories
bbglab/muts-needle-plot
A needle plot for mutation data
bbglab/boostdm-analyses
Source code to reproduce the figures of the boostDM paper
bbglab/bbgwiki
Website with info of all the tools and data used in the bbglab
bbglab/cgi-clinics-api
This repository contains python scripts to serve as a guide on how to use the CGI-Clinics API.
bbglab/wok
bbglab/cancer-detective
A simulation to learn about cancer and mutations, based on Cancer Genome Interpreter
bbglab/ch-drivers
bbglab/hartwig_biomarkers
bbglab/immunebiomarkers
bbglab/myvariant.info
MyVariant.info: A BioThings API for human variant annotations
bbglab/openvariant
Read, parse and operate different multiple input file formats with OpenVariant
bbglab/boostdm-pipeline
Learning pipeline to identify somatic SNVs under positive selection.
bbglab/containers
bbglab/evolution_TALL_adults
The evolution of relapse of adult T-cell acute lymphoblastic leukemia
bbglab/hotspot_propensity
Source code to reproduce hotspot propensity analyses and figures
bbglab/intogen-plus
a framework for automatic and comprehensive knowledge extraction based on mutational data from sequenced tumor samples from patients.
bbglab/qmap
A tool to run a collection of similar jobs quickly and easily in parallel. It can run standalone or using different HPC schedulers (Slurm, Sun Grid Engine...)
bbglab/transvar
A fork of TransVar at Github
bbglab/adventofcode
Advent of Code
bbglab/cancer-detective-pro
Eduscopi's version of Cancer Detective
bbglab/itab
Python tab files parsing and validating schema tools.
bbglab/oncodriveclustl
bbglab/oncodrivefml
bbglab/sars-cov-2-genomics
bbglab/second-tumors-children
This repository contains the necessary code to reproduce the analysis of "Origins of Second Malignancies in Children and Mutational Footprint of Chemotherapy in Normal Tissues"
bbglab/smregions