bebop/ark

Issues

• Determine RDMS

  #70 opened 2 years ago by TimothyStiles
  3

• Cleanup repo for local dev

  #69 opened 2 years ago by TimothyStiles
  3

• look into openAPI and GRAPHQL spec

  #80 opened 2 years ago by TimothyStiles
  1

• Infrastructure as code for deploying on cloud and local

  #71 opened 2 years ago by TimothyStiles
  3

• config for pre-filter of choice organisms

  #79 opened 2 years ago by TimothyStiles
  0

• One line install in Go

  #78 opened 2 years ago by TimothyStiles
  0

• template config format for downloading datasets and everything

  #77 opened 2 years ago by TimothyStiles
  0

• FluxCD for GitOps?

  #76 opened 2 years ago by TimothyStiles
  0

• Determine minimum viable test data set

  #68 opened 2 years ago by TimothyStiles
  3

• Issues setting up allbase for local development

  #65 opened 2 years ago by abondrn
  0

• Map uniprot records to corresponding genbank records

  #43 opened 2 years ago by TimothyStiles
  0

• Demonstrate a metabolic pathway traversal as an integrated example test

  #44 opened 2 years ago by TimothyStiles
  0

• Demonstrate Document Retrieval as an integrated example test

  #40 opened 2 years ago by TimothyStiles
  0

• Get Rhea RDF imported as a graph into SurrealDB

  #41 opened 2 years ago by TimothyStiles
  0

• Map Rhea elements to corresponding uniprot elements

  #42 opened 2 years ago by TimothyStiles
  0

• Set up mock tests for CI/CD workflows sans SurrealDB

  #39 opened 2 years ago by TimothyStiles
  0

• Integrate Allbase and Poly with Gitpod

  #61 opened 2 years ago by TimothyStiles
  1

• Create an end product description

  #58 opened 2 years ago by TimothyStiles
  0

• Create video tutorials for getting started with docs

  #59 opened 2 years ago by TimothyStiles
  0

• Call for speaking opportunities

  #57 opened 2 years ago by TimothyStiles
  0

• Integrate parser and live doc method into CI/CD pipeline for auto updated docs

  #55 opened 2 years ago by TimothyStiles
  0

• Make auto-docs site have drop down for doc's version

  #56 opened 2 years ago by TimothyStiles
  0

• Write parser for "tutorial tests"

  #53 opened 2 years ago by TimothyStiles
  0

• Find adequate live doc method that allows for network and IO

  #54 opened 2 years ago by TimothyStiles
  0

• Post and manage social media blitz

  #51 opened 2 years ago by TimothyStiles
  0

• Live Docs

  #52 opened 2 years ago by TimothyStiles
  0

• a/b test posts, and onboarding procedures before posting

  #50 opened 2 years ago by TimothyStiles
  0

• Draft social media posts for calls for contributors to irregular channels (specialized subreddits, hackernews, forums, and slack channels)

  #48 opened 2 years ago by TimothyStiles
  0

• Update README, insure one line install, review documentation and code quality in prep for launch

  #49 opened 2 years ago by TimothyStiles
  0

• Prepare onboarding procedures for new developers and triaging towards appropriate projects

  #46 opened 2 years ago by TimothyStiles
  0

• Draft social media calls for contributors for regular channels (twitter, discord, etc))

  #47 opened 2 years ago by TimothyStiles
  0

• Write a blog post explaining the bio data access problem and how we plan to fix it

  #45 opened 2 years ago by TimothyStiles
  0

• Write parser for PDBx

  #75 opened 2 years ago by TimothyStiles
  0

• Publish public draft spec of Ark and create call for contributors

  #74 opened 2 years ago by TimothyStiles
  0

• Deploy Ark Database via "cloud"

  #73 opened 2 years ago by TimothyStiles
  0

• Create user/org authorization and authentication

  #72 opened 2 years ago by TimothyStiles
  0

• Integrate streaming parsers and mock tests for data downloading.

  #26 opened 2 years ago by TimothyStiles
  0

• Update Schema to incorporate the Catalyst Information

  #64 opened 2 years ago by rkrishnasanka
  1

• Get minified genbank and uniprot test databases into SurrealDB as docs

  #37 opened 2 years ago by TimothyStiles
  0

• Get sending and receiving arbitrary golang structs working with surrealdb

  #60 opened 2 years ago by TimothyStiles
  1

• document SurrealDB golang client and make PR to maintainer's repo

  #38 opened 2 years ago by TimothyStiles
  1

• Make useful query tests

  #15 opened 2 years ago by Koeng101
  0

• Local dev environment

  #12 opened 2 years ago by TimothyStiles
  0

• indexing columns

  #25 opened 2 years ago by TimothyStiles
  0

• Figure out how sqlboiler upsert methods handle conflicts.

  #33 opened 2 years ago by TimothyStiles
  0

• Fix rhea in allbase

  #11 opened 3 years ago by Koeng101
  5

• Subcommands and Cobra commander.

  #14 opened 3 years ago by TimothyStiles
  0

• testing main with testing.M?

  #17 opened 3 years ago by TimothyStiles
  2

• Ftp sites

  #18 opened 4 years ago by Koeng101
  4

• Mac osx tests work locally but not via github actions.

  #13 opened 4 years ago by TimothyStiles
  1