metabolic-pathways

There are 21 repositories under metabolic-pathways topic.

  • jotech/gapseq

    Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks

    Language:R145918729

  • tubanlee/MM

    Infer metabolic directions from moment differences of mass-weighted intensity distributions

    Language:R5911026

  • iquasere/KEGGCharter

    A tool for representing genomic potential and transcriptomic expression into KEGG pathways

    Language:Python454176

  • bebop/ark

    Go REST API to replace Genbank, Uniprot, Rhea, and CHEMBL

    Language:Go224555

  • mauriceling/advancesyntoolkit

    Toolkit for Modelling and Simulation of Gene Expressions and Metabolism

    Language:Python124040

  • bioasp/meneco

    :m: Metabolic network completion

    Language:Jupyter Notebook910129

  • MetExplore/dexom

    Diversity-based enumeration of optimal context-specific metabolic networks

    Language:MATLAB5631

  • y1zhou/metabolike

    Identifying reprogrammed metabolic routes given omics data.

    Language:Python51220

  • brsynth/straindesign

    Library to perform metabolic engineering tasks

    Language:Python4130

  • ToniWestbrook/paladin-plugins

    Pipeline plugins for PALADIN, providing HPC support, abundance (taxonomy, go terms), customized reports, etc

    Language:Python3231

  • hallamlab/reMap

    reMap: relabeling metabolic pathway data with groups to improve prediction outcomes

    Language:Python1400
  • MNXref

    MetaNetX/MNXref

    MNXref: Reconciliation of metabolites and biochemical reactions for metabolic networks

    1300

  • munozalexander/MetNet

    A basic network of human metabolism, including key enzymes, intermediates, and hormonal influences

    Language:Swift1100

  • PathVisio/FindYourInteraction

    PathVisio plugin to find relevant metabolic reactions from Rhea

    Language:Java1311

  • cnapy-org/efmtool_link

    Language:Python0300

  • hallamlab/leADS

    leADS: improved metabolic pathway inference based on active dataset subsampling

    Language:Python0401

  • mathieubolteau/M1_PDP_Project

    Web application of metabolics pathway visualisation, for the Gencovery business (https://gencovery.com/), created during the PDP project during the M1 of the Master of Bioinformatics, in Bordeaux.

    Language:JavaScript0110

  • willchenko/mpact

    Serves as the backend code for https://www.curatemetabolicpathways.com

    Language:Python0100

  • arbasher/prepBioCyc

    prepBioCyc: Preprocess BioCyc files

    Language:Python25

  • hallamlab/chap

    CHAP: Modeling Metabolic Pathways as Groups (with Augmentation)

    Language:Python501

  • hallamlab/triUMPF

    Metabolic pathway inference using non-negative matrix factorization with community detection

    Language:Python421