y1zhou/metabolike

Issues

• Tests for neo4j-related code

  #14 opened 2 years ago by y1zhou
  4

• [MetaCyc] GIBBS-0 and STD-REDUCTION-POTENTIAL in reversible reactions

  #31 opened 2 years ago by y1zhou
  0

• Link BRENDA enzymes to the graph

  #7 opened 2 years ago by y1zhou
  2

• Weight edges in route search

  #27 opened 2 years ago by y1zhou
  0

• reaction side doesn't match in SBML and dat file

  #24 opened 2 years ago by y1zhou
  1

• Reversibility mismatch in SBML and dat file

  #25 opened 2 years ago by y1zhou
  0

• Some reaction nodes are getting dropped

  #23 opened 2 years ago by y1zhou
  0

• Initial Update

  #21 opened 2 years ago by pyup-bot
  0

• Track atom flow in reactions

  #19 opened 2 years ago by y1zhou
  0

• Duplicated canonical reactions

  #18 opened 2 years ago by y1zhou
  1

• Pathway nodes with Reaction IDs

  #17 opened 2 years ago by y1zhou
  1

• Parse links in the `COMMENT` field

  #11 opened 2 years ago by y1zhou
  2

• Add atom mappings to reactions and compounds

  #12 opened 2 years ago by y1zhou
  0

• Documentation

  #6 opened 2 years ago by y1zhou
  1

• Super-pathway nodes are not annotated

  #10 opened 2 years ago by y1zhou
  3

• Link MetaCyc pathways to reactions

  #5 opened 2 years ago by y1zhou
  1

• Information about citations in `pubs.dat`

  #15 opened 2 years ago by y1zhou
  0

• `classes.dat` contains the common name for a lot of the frames and IDs used in `pathways.dat`.

  #13 opened 2 years ago by y1zhou
  0

• Annotation of compounds

  #16 opened 2 years ago by y1zhou
  0

• Reaction ID mismatch

  #9 opened 2 years ago by y1zhou
  0

• Additional information in reactions.dat

  #8 opened 2 years ago by y1zhou
  0

• Improve BRENDA load time

  #1 opened 3 years ago by y1zhou
  1