beiko-lab/arete

Change default resource requirements and add different resource profiles

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jvfe commented
  • For example -profile small|medium|large which should account for datasets of 0-200 assemblies, 200-1000 assemblies, >1000 assemblies, respectively.
  • Make small the default.
  • Document this.
  • Base on results acquired from testing-datasets, i.e. 20x5, 100-genome entirococcus (small); Jee-entirococcus (medium); Entirococcus (Large).
  • Disable/enable parts of the workflow based on these profiles (sensible defaults).