jvfe

MSc Student @ BioME / UFRN | Bioinformatics Developer

@dalmolingroupNatal, Brazil

Pinned Repositories

arete
AMR/VF LGT focused bacterial genomics analysis workflow
Language:Python19 2 734
euryale
A pipeline for taxonomic classification and functional annotation of metagenomic reads. Based on MEDUSA
Language:Nextflow3 1 10
MicroView
A reporting tool for aggregating results from taxonomic classification analyses
Language:Python0 1 00
cookiecutter-compbio
A cookiecutter template for computational biology projects
Language:Python41
go2cell
Link Gene Ontology IDs to cell types
Language:R0 1 00
gtf2bed
Language:Python3 1 00
pytrials
Python package that wraps around the ClinicalTrials.gov API
Language:Python39 4 813
reconciler
Python package to reconcile DataFrames
Language:Python21 1 146
wikidata2df
Utility package for easily turning a SPARQL query into a Pandas dataframe
Language:Python8 1 10

jvfe's Repositories

jvfe/pytrials
Python package that wraps around the ClinicalTrials.gov API
Language:Python39 4 813
jvfe/reconciler
Python package to reconcile DataFrames
Language:Python21 1 146
jvfe/wikidata_panglaodb
Research compendium for the project "Wikidata to build 5-star Linked Open biological databases: A case study of PanglaoDB".
Language:Q#2
jvfe/krakenclassify
Language:Nextflow1 1 01
jvfe/micfunpred_latch
Language:Python1 1 0
jvfe/go2cell
Link Gene Ontology IDs to cell types
Language:R0 1 00
jvfe/jvfe-ldsc
Language:Nextflow00
jvfe/arete
AMR/VF LGT focused bacterial genomics analysis workflow
Language:Python0 0
jvfe/arete-test-data
Language:Dockerfile
jvfe/astrocyte_markers
Language:JavaScript1 0
jvfe/awesome-compbio-chatgpt
An awesome repository of community-curated applications of ChatGPT and other LLMs im computational biology
0 01
jvfe/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell
jvfe/cookiecutter-snekpack
A cookiecutter package for an enlightened python package
Language:Python0 0
jvfe/dada2_latch
A Latch workflow for running DADA2
Language:Python2
jvfe/dotfiles
My configs, managed by dotbot
Language:Lua1 0
jvfe/gene2go_latch
Language:Python1
jvfe/geneplast-example
Language:R
jvfe/git_example
Pequeno repositório de exemplo do git
Language:Nextflow
jvfe/intro-single-cell
Introduction to single-cell RNA-seq analysis
jvfe/jvfe
1 0
jvfe/jvfe.github.io
My personal website
Language:SCSS1 0
jvfe/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
Language:Nextflow
jvfe/mr_microbiome_mdd
Language:R
jvfe/nextflow-vim
Nextflow plugin for VIM
Language:Vim Script
jvfe/protein-neighbourhood
Simple webpage for protein interactions
Language:HTML1 0
jvfe/taxonomy_latch
Latch Workflow to run the Kaiju classifier
Language:Python1 0
jvfe/tcruzi_gene_exp
Workflow to preprocess and extract T. cruzi gene expression data
Language:Nextflow
jvfe/ukb_ppp_gsmr
Workflow to run GCTA-GSMRs Mendelian Randomization using UKB-PPP data as exposure and a given sumstats as an outcome.
Language:Nextflow
jvfe/wdt_contribs
Language:Jupyter Notebook
jvfe/website
Language:HTML