belalmedhat

belalmedhat's Stars

• arpcard/aro

  The Antibiotic Resistance Ontology (ARO) organizes the information describing the ability of a microorganism to withstand the effects of an antibiotic

  Language:Makefile176

• egraff/uit-thesis

  LaTeX document class for writing theses

  Language:TeX4343

• egraff/uit-thesis-installer

  Net installer for UiT thesis LaTeX template

  Language:Shell32

• uit-hdl/uit-hdl.github.io

  Language:HTML44

• kpatel427/YouTubeTutorials

  Language:R299131

• pyro-ppl/numpyro

  Probabilistic programming with NumPy powered by JAX for autograd and JIT compilation to GPU/TPU/CPU.

  Language:Python2.4k246

• compgenomr/book

  Language:TeX339291

• al2na/methylKit

  R package for DNA methylation analysis

  Language:R21797

• rmcelreath/stat_rethinking_2023

  Statistical Rethinking Course for Jan-Mar 2023

  Language:R2.2k250

• fehiepsi/rethinking-numpyro

  Statistical Rethinking (2nd ed.) with NumPyro

  Language:Jupyter Notebook45074

• thomas-haslwanter/statsintro_python

  Python modules and IPython Notebooks, for the book "Introduction to Statistics With Python"

  Language:HTML864572

• scverse/scanpy

  Single-cell analysis in Python. Scales to >1M cells.

  Language:Python2k609

• RasmussenLab/MOVE

  MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations

  Language:Jupyter Notebook7026

• scverse/mudata

  Multimodal Data (.h5mu) implementation for Python

  Language:Python8117

• Starlitnightly/omicverse

  A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.

  Language:Jupyter Notebook53767

• juancgvazquez/MODApy

  Multi-Omics Data Analysis in Python

  Language:Jupyter Notebook41

• scverse/muon

  muon is a multimodal omics Python framework

  Language:Python22430

• glasgowcompbio/pyMultiOmics

  Python toolbox for multi-omics data mapping and analysis

  Language:Jupyter Notebook225

• JonnyTran/OpenOmics

  A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.

  Language:Python3112

• probml/pml2-book

  Probabilistic Machine Learning: Advanced Topics

  1.4k120

• theislab/single-cell-best-practices

  https://www.sc-best-practices.org

  Language:Jupyter Notebook819198

• flutter/flutter

  Flutter makes it easy and fast to build beautiful apps for mobile and beyond

  Language:Dart168k27.9k

• ageron/handson-ml2

  A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.

  Language:Jupyter Notebook28.2k12.8k

• OmicsML/awesome-deep-learning-single-cell-papers

  71592

• mikelove/awesome-multi-omics

  List of software packages for multi-omics analysis

  748166

• hussius/deeplearning-biology

  A list of deep learning implementations in biology

  2k484

• mahmoodlab/PORPOISE

  Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell

  Language:Jupyter Notebook19237

• belalmedhat/bioinformatics-SequenceAlignment

  Implementations for sequence alignment algorithms using Python and Julia programming Languages (Serial and Parallel Computing such as MultiProcessing, GPUComputing, MPI, Hadoop)

  Language:Python1

• AhmedAbdel-Aal/CSEN703-Algorithms-in-Python

  Python implementation of some problems by programming different paradigm

  Language:Python1

• vinta/awesome-python

  An opinionated list of awesome Python frameworks, libraries, software and resources.

  Language:Python231k25.1k