bendichter
Founder of @CatalystNeuro. Computational neuroscience, data standardization, @NeurodataWithoutBorders, data management and visualization, open science
CatalystNeuroPhiladelphia
Pinned Repositories
bendichter.github.io
brokenaxes
Create matplotlib plots with broken axes
ephys_analysis
FilterM
A faster FILTER and FILTFILT: Speedup factor 2.5 to 25
ipfx
probeinterface
Python package to handle probe layout, geometry and wiring to device.
recogmem-release-NWB
A NWB-based Dataset and Processing Pipeline of Human Single-Neuron Activity During a Declarative Memory Task
seaborn
Statistical data visualization using matplotlib
tenseflow
Change the tense of any text
bendichter's Repositories
bendichter/brokenaxes
Create matplotlib plots with broken axes
bendichter/tenseflow
Change the tense of any text
bendichter/bendichter.github.io
bendichter/probeinterface
Python package to handle probe layout, geometry and wiring to device.
bendichter/aind-data-schema
A library that defines AIND data schema and validates JSON.
bendichter/bendichter
bendichter/bids-specification
Brain Imaging Data Structure (BIDS) Specification
bendichter/CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
bendichter/code-crafter
bendichter/DeepLabCut
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
bendichter/docs
Brainlife.io Documentation
bendichter/filesystem_spec
A specification that python filesystems should adhere to.
bendichter/hdfpath
XPath for HDF5
bendichter/kerchunk
Cloud-friendly access to archival data
bendichter/linkml
Linked Open Data Modeling Language
bendichter/minian
miniscope analysis pipeline with interactive visualizations
bendichter/ndx-aind-metadata
bendichter/neurosift
Visualizations for Neuroscience
bendichter/nwbio
bendichter/openMINDS_documentation
Read-The-Docs documentation for the openMINDS metadata framework.
bendichter/openscope_databook
OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁🧠🔬🖥️📈
bendichter/parse
Parse strings using a specification based on the Python format() syntax.
bendichter/probeinterface_library
Collection of probe description for probeinterface
bendichter/py-pkgs
Open source book about making Python packages.
bendichter/py_isx
Experimentlal pure-python API to read Inscopix data
bendichter/python-neo
Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats
bendichter/spikeinterface
A Python-based module for creating flexible and robust spike sorting pipelines.
bendichter/spyglass
Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF
bendichter/sweep
Sweep: AI-powered Junior Developer for small features and bug fixes.
bendichter/VAME
Variational Animal Motion Embedding - A tool for time series embedding and clustering