bendichter
Founder of @CatalystNeuro. Computational neuroscience, data standardization, @NeurodataWithoutBorders, data management and visualization, open science
CatalystNeuroPhiladelphia
Pinned Repositories
bendichter.github.io
brokenaxes
Create matplotlib plots with broken axes
ephys_analysis
FilterM
A faster FILTER and FILTFILT: Speedup factor 2.5 to 25
ipfx
probeinterface
Python package to handle probe layout, geometry and wiring to device.
recogmem-release-NWB
A NWB-based Dataset and Processing Pipeline of Human Single-Neuron Activity During a Declarative Memory Task
seaborn
Statistical data visualization using matplotlib
tenseflow
Change the tense of any text
bendichter's Repositories
bendichter/.github
bendichter/api-python
[DEPRECATED] Python API for NWB < 2.0
bendichter/centerforopenneuroscience.org
Website materials
bendichter/DLC2NWB
Utilities to convert DeepLabCut (DLC), output to/from Neurodata Without Borders (NWB) format.
bendichter/element-animal
About DataJoint Elements for Animal Management - U24 effort
bendichter/element-array-ephys
DataJoint Element for Extracellular Array Electrophysiology - NIH U24
bendichter/element-calcium-imaging
DataJoint Element for Calcium Imaging - NIH U24
bendichter/element-interface
Common functions for the DataJoint Elements
bendichter/element-lab
DataJoint Element for Lab Management - NIH U24
bendichter/element-session
DataJoint Element for Session - NIH U24
bendichter/fstring_parser
bendichter/h5py
HDF5 for Python -- The h5py package is a Pythonic interface to the HDF5 binary data format.
bendichter/hackweeks-as-a-service
eScience Institute supports hackweeks for community education and collaboration
bendichter/mpl_utils
bendichter/ndx-optogenetics
bendichter/ndx-pose-training
NWB extension to store pose estimation and pose estimator training data
bendichter/neurocaas
IaC codebase for the NeuroCAAS Platform
bendichter/neuroconv
Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.
bendichter/nwb-extensions.github.io
GitHub.io website for the NWB Extensions Catalog
bendichter/nwbinspector
Tool to help inspect NWB files for compliance with NWB Best Practices
bendichter/physio
python toolbox to analyse physiological signals : respiration and ECG
bendichter/s3fs
S3 Filesystem
bendichter/SODA-for-SPARC
Simplifying data curation for researchers funded by the NIH SPARC initiative
bendichter/spikeinterface
A Python-based module for creating flexible and robust spike sorting pipelines.
bendichter/SpikeInterface.github.io
spikeinterface report
bendichter/spyking-circus
Fast and scalable spike sorting in python
bendichter/suite2p
cell detection in calcium imaging recordings
bendichter/voluseg
pipeline for volumetric cell segmentation
bendichter/workflow-array-ephys
Example DataJoint workflow of `element-array-ephys` - NIH U24
bendichter/zarr-python
An implementation of chunked, compressed, N-dimensional arrays for Python.