Pinned Repositories
binpacking
Distribution of weighted items to bins (either a fixed number of bins or a fixed number of volume per bin). Data may be in form of list, dictionary, list of tuples or csv-file.
COVID19CaseNumberModel
Fit the algebraic growth of case numbers in Mainland China with an SIR-containment model
epipack
Fast prototyping of epidemiological models based on reaction equations. Analyze the ODEs analytically or numerically, or run stochastic simulations on networks/well-mixed systems.
fisheye
The original fisheye function has a visual flaw due to discontiuities in its first derivative. Here, I present a fisheye function which is continuously differentiable and hence more pleasing to the eye.
netwulf
Interactive visualization of networks based on Ulf Aslak's d3 web app.
python-fisheye
Transform single points or arrays of points using several fisheye functions.
qsuite
command line tool to provide an easy framework to submit computer simulations of arbitrary variety in parameter space to various cluster frameworks
reaction-diffusion
Some Python examples to obtain reaction-diffusion results and animations.
smallworld
Generate and analyze small-world networks according to the revised Watts-Strogatz model where the randomization at β = 1 is truly equal to the Erdős-Rényi network model.
tacoma
Temporal networks in Python. Provides fast tools to analyze temporal contact networks and simulate dynamic processes on them using Gillespie's SSA.
benmaier's Repositories
benmaier/netwulf
Interactive visualization of networks based on Ulf Aslak's d3 web app.
benmaier/binpacking
Distribution of weighted items to bins (either a fixed number of bins or a fixed number of volume per bin). Data may be in form of list, dictionary, list of tuples or csv-file.
benmaier/epipack
Fast prototyping of epidemiological models based on reaction equations. Analyze the ODEs analytically or numerically, or run stochastic simulations on networks/well-mixed systems.
benmaier/COVID19CaseNumberModel
Fit the algebraic growth of case numbers in Mainland China with an SIR-containment model
benmaier/qsuite
command line tool to provide an easy framework to submit computer simulations of arbitrary variety in parameter space to various cluster frameworks
benmaier/ThredgeCorr
Generate instances of the thresholded locally correlated edge weights network model and calculate its properties.
benmaier/bfmplot
A collections of snippets and tools to make my plots and my life easier.
benmaier/kd-tree-js
A JavaScript implementation of a kd tree that enables fast searches for points within a range as well as nearest neighbors in d dimensions
benmaier/pipetex2tex
CLI to convert LaTeX source with piped "\input{|...}" commands into pure LaTeX.
benmaier/CV
My automatically generated CV
benmaier/radial-distance-layout
Generates a radial layout for trees whose nodes are associated with a distance to the root
benmaier/benmaier.github.io
benmaier/cQuadTree
Python API to a C++-implementation of a BarnesHutTree/QuadTree
benmaier/de-omicron-wave-results
Results of a modelling study regarding the spread of SARS-CoV-2 VOC "Omicron" in Germany
benmaier/fincoretails
Fit a bunch of distributions with finite core and heavy tails to data
benmaier/network-centrality-visualizations
Some hacky code to visualize centrality measures in networks
benmaier/BarnesHutTree
Simple and adaptable C++ Barnes-Hut-tree implementation for 2D, based on openFrameworks but de facto stand-alone
benmaier/DiffLimAgg
Diffusion-limited aggregation
benmaier/example-CRUD-select2
Using select2 asynchronously in both create and update like you would do in django-admin
benmaier/example-django-crud-admin-lte-select2
Demonstrate problems with django-select2 in django-crud-adminlte
benmaier/geonameapi
A small API to send search queries to a geoname database.
benmaier/group-publication-record
Scripts to build a research group publication record.
benmaier/homebrew-science
:snowflake: Scientific formulae for Homebrew and Linuxbrew (legacy)
benmaier/ljhouses
C++-based Python package to efficiently simulate 2D Lennard-Jones spheres in an external potential
benmaier/parmscan
Provide tools to plot parameter scan results that are wrapped up in a high-dimensional numpy array
benmaier/powerlaw
benmaier/rkigeonameapi
An API to make relevant queries to an edited Geoname-DB instance.
benmaier/scipy_ode_example
benmaier/submitex
Tools and CLIs to make your tex-files submission-ready.
benmaier/vaccontrib
Quantifying the contributions vaccinated individuals make to the reproduction number