betteridiot/bamnostic
a pure Python multi-version tolerant, runtime and OS-agnostic Binary Alignment Map (BAM) file parser and random access tool
PythonBSD-3-Clause
Issues
- 2
- 1
report the output of igv
#45 opened by worker000000 - 2
Pyscript-Pyodide-PyPI wheel request
#53 opened by AngelicaLindlof - 2
- 1
Issues retrieving alignment sequences from reads
#51 opened by Jeshuwin - 3
bam.fetch not working properly
#49 opened by najoshi - 2
ValueError with example_bam
#48 opened by Eugene108 - 6
an error when read bam
#47 opened by Frank1219 - 6
benchmarking
#46 opened - 1
- 2
Writing out to a new bam file
#42 opened by claudiadast - 3
fetch() no output
#39 opened by vibhasridavuluri - 2
Read attributes/parameters do not agree with what pysam would show and with what one would expect
#36 opened by ThomasH-RGB - 4
"IndexError: tuple index out of range"
#32 opened by Akanksha2511 - 2
- 2
Installation bugs
#30 opened by olgabot - 0
Cannot load long read BAM files
#27 opened by betteridiot - 4
"random access" takes to long when start and end are the same and not found in bam-file
#26 opened by envanloo - 2
contig name changed too lower case in bam.py --> contig name not found in header
#25 opened by envanloo - 1
csi_dev works fine on 10x bam
#23 opened by olgabot - 5
BAM output support
#5 opened by peterjc - 10
- 0
fromstring() --> frombytes() issue
#19 opened by betteridiot - 6
Still cannot read 10x bam file
#16 opened by olgabot - 4
Cannot read 10x bam file
#15 opened by olgabot - 1
CSI indexing support as well as BAI indexing
#3 opened by peterjc - 4
CRAM support?
#4 opened by peterjc - 2
- 1
Put bgzf.py under 3-clause BSD
#9 opened by peterjc - 0
different bam files
#2 opened