bfosso
Bioinformatician working on the Metagenomics investigation of environmental and host-associated microbiomes.
Department of Biosciences. Biotechnologies and Environment, University of BariBari, Italy
Pinned Repositories
biomas_cwl
basic implementation of BioMaS pipeline in CWL
CNR_IBIOM_statistics
CNR_IBIOM Twitter account statistics
ITSoneDB-population-pipeline
Scripts used for the population of ITSoneDB
ITSoneDB_qiime
ITSoneDB release for the integration into the QIIME2 pipeline
MatLab_course
Documents regarding the Claudio Angioni MatLab course
MetaShot
MetaShot (Metagenomics Shotgun) is a complete pipeline designed for the taxonomic classification of the human microbiota members. In MetaShot, third party tools and new developed Python and Bash scripts are integrated to analyze paired-end (PE) Illumina sequences, offering an automated procedure covering all the analysis steps from raw data management to taxonomic profiling. It is designed to analyze both DNA-Seq and RNA-Seq data.
Salsi_et_al_Doc
This repository contains bioinformatic codes used to analysis data discussed in Salsi et al., 202(4)
SDATA_bio_Desc
Description of the bioinformatic workflow applied in Passaro et al 2019
kMetaShot
bfosso's Repositories
bfosso/MetaShot
MetaShot (Metagenomics Shotgun) is a complete pipeline designed for the taxonomic classification of the human microbiota members. In MetaShot, third party tools and new developed Python and Bash scripts are integrated to analyze paired-end (PE) Illumina sequences, offering an automated procedure covering all the analysis steps from raw data management to taxonomic profiling. It is designed to analyze both DNA-Seq and RNA-Seq data.
bfosso/MatLab_course
Documents regarding the Claudio Angioni MatLab course
bfosso/biomas_cwl
basic implementation of BioMaS pipeline in CWL
bfosso/CNR_IBIOM_statistics
CNR_IBIOM Twitter account statistics
bfosso/ITSoneDB-population-pipeline
Scripts used for the population of ITSoneDB
bfosso/ITSoneDB_qiime
ITSoneDB release for the integration into the QIIME2 pipeline
bfosso/Salsi_et_al_Doc
This repository contains bioinformatic codes used to analysis data discussed in Salsi et al., 202(4)
bfosso/SDATA_bio_Desc
Description of the bioinformatic workflow applied in Passaro et al 2019