bfosso/MetaShot
MetaShot (Metagenomics Shotgun) is a complete pipeline designed for the taxonomic classification of the human microbiota members. In MetaShot, third party tools and new developed Python and Bash scripts are integrated to analyze paired-end (PE) Illumina sequences, offering an automated procedure covering all the analysis steps from raw data management to taxonomic profiling. It is designed to analyze both DNA-Seq and RNA-Seq data.
PythonGPL-3.0
Issues
- 9
Hi tango question
#11 opened by withJack - 30
metashot failed when running into python env
#10 opened by lmanchon - 4
MetaShot Application to Environmental Samples
#2 opened by cam315 - 2
- 10
files not found
#7 opened by lmanchon - 1
MetaShot not multi-threaded
#8 opened by lmanchon - 1
DIrect link to reference collections?
#6 opened by transcript - 2
PhiX sequences
#5 opened by mgandal - 1
- 1