bgoli
Biochemist, Research Software Engineer, Data Steward (@SystemsBioinformatics, @sbmlteam, @PySCeS, @vu-rdm-tech).
@SystemsBioinformatics @PySCeS @sbmlteam @vu-rdm-techAmsterdam
Pinned Repositories
aimms-publication-tools
Tools for generating publication reports for AIMMS based on PURE output
bagit-python
Work with BagIt packages from Python.
cbmpy
CBMPy is a Python based platform for constraint based modelling and analysis.
cbmpy-web-curator
A web-based curation tool for genome scale, constraint-based models
sbml-specifications
The specification documents for SBML.
pysces
The official PySCeS project source code repository.
libsbml
LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (SBML). It offers language bindings for C, C++, C#, Java, JavaScript, MATLAB, Perl, PHP, Python, R and Ruby.
sbml-specifications
The specification documents for SBML.
cbmpy
CBMPy is a Python based platform for constraint based modelling and analysis.
cbmpy-metadraft
CBMPy Metadraft: a flexible and extensible genome-scale model reconstruction tool
bgoli's Repositories
bgoli/cbmpy-web-curator
A web-based curation tool for genome scale, constraint-based models
bgoli/aimms-publication-tools
Tools for generating publication reports for AIMMS based on PURE output
bgoli/bagit-python
Work with BagIt packages from Python.
bgoli/cbmpy
CBMPy is a Python based platform for constraint based modelling and analysis.
bgoli/sbml-specifications
The specification documents for SBML.
bgoli/cbmpy-build
Depdency configuration scripts
bgoli/cbmpy-dev
CBMPy internal development tools
bgoli/cbmpy-docs
Documentation for CBMPy
bgoli/cbmpy-glpk
bgoli/cbmpy-metadraft
CBMPy Metadraft: a flexible and extensible genome-scale model reconstruction tool
bgoli/cbmpy-metadraft-templates
Template models for MetaDraft
bgoli/cbmpy-test-suite
CBMPy test suite
bgoli/Data_Champions_initiatives
Keeping track of international data champions initives
bgoli/melite-metadata
This repository contains the the human writable (text-based) serialization of a subset of DataCite 4.4 elements.
bgoli/pysces
The official PySCeS project source code repository.
bgoli/python-irodsclient
A Python API for iRODS
bgoli/sbml-fbc-spec
My SBML spec development area
bgoli/sbml-org-website
(Work in progress) A new, modern version of the SBML.org website
bgoli/stochpy
StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks