SBML Team

The team supports SBML infrastructure & the SBML community. Note: additional team projects are located in SourceForge at https://sourceforge.net/projects/sbml/

Pinned Repositories

deviser
Design Explorer and Viewer for Iterative SBML Enhancement of Representations
Language:C++6 7 595
jsbml
JSBML is a community-driven project to create a free, open-source, pure Java™ library for reading, writing, and manipulating SBML files (the Systems Biology Markup Language) and data streams. It is an alternative to the mixed Java/native code-based interface provided in libSBML.
Language:Java37 25 18024
libCombine
a C++ library for working with the COMBINE Archive format
Language:C++8 9 525
libsbml
LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (SBML). It offers language bindings for C, C++, C#, Java, JavaScript, MATLAB, Perl, PHP, Python, R and Ruby.
Language:C++43 9 16928
moccasin
MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.
Language:Python11 8 502
python-libsbml
Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
Language:Python21 6 296
sbml-specifications
The specification documents for SBML.
Language:TeX6 6 4003
sbml-test-suite
The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML support provided in a software package.
Language:JavaScript23 7 7113
SBMLreporter
SBMLreporter provides a way to read the contents of XML-based SBML files. This is helpful and important for, e.g., error detection, proofreading and model communication. SBMLreporter is a new implementation of SBML2LaTeX.
Language:Java4 9 51
sbmlteam.github.io
The source code and issue tracker for the SBML.org website.
Language:HTML9 7 414

SBML Team's Repositories

sbmlteam/libsbml
LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (SBML). It offers language bindings for C, C++, C#, Java, JavaScript, MATLAB, Perl, PHP, Python, R and Ruby.
Language:C++43 9 16928
sbmlteam/jsbml
JSBML is a community-driven project to create a free, open-source, pure Java™ library for reading, writing, and manipulating SBML files (the Systems Biology Markup Language) and data streams. It is an alternative to the mixed Java/native code-based interface provided in libSBML.
Language:Java37 25 18024
sbmlteam/sbml-test-suite
The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML support provided in a software package.
Language:JavaScript23 7 7113
sbmlteam/python-libsbml
Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
Language:Python21 6 296
sbmlteam/moccasin
MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.
Language:Python11 8 502
sbmlteam/sbmlteam.github.io
The source code and issue tracker for the SBML.org website.
Language:HTML9 7 414
sbmlteam/libCombine
a C++ library for working with the COMBINE Archive format
Language:C++8 9 525
sbmlteam/deviser
Design Explorer and Viewer for Iterative SBML Enhancement of Representations
Language:C++6 7 595
sbmlteam/sbml-specifications
The specification documents for SBML.
Language:TeX6 6 4003
sbmlteam/sbml-spatial-models
Repository of models to test exchange of sbml-spatial models.
5 7 02
sbmlteam/SBMLreporter
SBMLreporter provides a way to read the contents of XML-based SBML files. This is helpful and important for, e.g., error detection, proofreading and model communication. SBMLreporter is a new implementation of SBML2LaTeX.
Language:Java4 9 51
sbmlteam/libSBML-dependencies
Set of dependencies for compiling libSBML
Language:C3 7 11
sbmlteam/QtDeviser
DEVISER Edit, an UI for defining DEVISER input files
Language:NSIS3 8 1
sbmlteam/mathml-tests
Tests for infix-to-mathML and mathML-to-infix for both libsbml and jsbml.
Language:C++2 6 0
sbmlteam/SBMLToolbox
An open-source toolbox for working with SBML in MATLAB
Language:MATLAB2 3 21
sbmlteam/libsbml-build-scripts
Scripts and utilities used to build and deploy a libSBML release
Language:Makefile1 8 0
sbmlteam/logos-and-promos
SBML logo artwork and their terms of use
Language:PostScript1 6 0
sbmlteam/sbml-level-3-paper-overleaf
Copy of Overleaf project for the SBML Level 3 paper submitted to MSB
Language:TeX1 6 0
sbmlteam/template
Template repository for software projects by the SBML Team
Language:Shell1 6 0
sbmlteam/cdroms-2003
Archive of CD-ROMS we produced in 2003
Language:HTML6 0
sbmlteam/jib-paper-2019
Paper published in the Journal of Integrative Bioinformatics in 2019
Language:TeX6 0
sbmlteam/labels-try-1
6 2
sbmlteam/labels-try-2
6 0
sbmlteam/labels-try-3
5 1
sbmlteam/liblx
The XML parser portion of LibSBML as a separate library.
Language:C++5 62
sbmlteam/sbml-level-3-paper
Overall repository for the SBML Level 3 paper submitted to MSB
Language:TeX6 0
sbmlteam/sbml-level-3-paper-diff
Setup for running latexdiff on the SBML Level 3 paper
Language:Makefile6 0
sbmlteam/sbml-level-3-paper-response-letter
Response to reviewers for SBML Level 3 paper submitted to MSB
Language:TeX6 0
sbmlteam/specifications-bib
Language:TeX6 01
sbmlteam/specifications-tex
Language:PostScript6 0