bhattlab/MGEfinder

How to use MGEfinder software to find MGE from assembled genome in spite of raw reads

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Hi Sir,
I want to use the MGEfinder tool to find mobile genetic elements from assembled genome despite raw reads. How can I implement this program?

Take a look at the mgefinder command "wholegenome." This feature hasn't been fully tested, but I have been using it myself and it seems to work well.

Dear Durrantmm Sir,
Thanks to reply me.
I will check mentioned commond.