bhattlab/MGEfinder

Issues

• non-zero exit status 255 Error on Mac while running mgefinder

  #53 opened 4 months ago by chandanabasak
  0

• unable to run test data

  #46 opened 2 years ago by narib
  1

• Hello there i'm trying to run a test on Non-toxin CD 's MGE, but i encounter an error which i can't slove

  #51 opened 7 months ago by CDI-PMCC
  3

• Why was test_workdir/00.genome/efae_GCF_900639545.fna chosen as the reference genome?

  #52 opened 5 months ago by jiejiemao
  0

• unable to install using install.sh script - package dependencies not available?

  #50 opened 7 months ago by mafuller
  0

• Confusion in Interpreting the Results

  #49 opened a year ago by miniluphy
  8

• cutadapt: error: FASTQ file ended prematurely Cutadapt terminated with exit signal: '256'.

  #45 opened 2 years ago by qianxin-kxy
  1

• Missing input file error when file is in directory

  #26 opened 3 years ago by Kylies5
  3

• Error in job genotype while creating output file

  #42 opened 2 years ago by Oelsakha
  7

• No Output File

  #43 opened 2 years ago by REMOUS-MAX
  1

• MGE for FASTA format

  #44 opened 2 years ago by leggylas
  1

• Issue with pandas dependency

  #40 opened 2 years ago by jordiabante
  3

• Analysis of assembled genome

  #38 opened 2 years ago by drehertw
  1

• No termini found in the input file...

  #29 opened 2 years ago by SamuelGreenrod
  7

• Error in job make_database while creating output files

  #36 opened 2 years ago by gvic628
  7

• Could I use it on metagenomics data？

  #37 opened 2 years ago by LUCAS-1873
  1

• error in step mgefinder formatbam

  #41 opened 2 years ago by Oelsakha
  2

• How to find the Insertion-Enriched Sites caused by Insertion sequences

  #39 opened 2 years ago by Daikuang
  1

• I have a problem when i use method 1 to install MGEfinder!

  #22 opened 4 years ago
  6

• Using MGEfinder with multiple species

  #31 opened 3 years ago by spencer411
  1

• Can MGEfinder be used for metagenomics data of infant gut?

  #32 opened 3 years ago by xuanji2017
  7

• Request for additional information on question #30 regarding "reference"

  #34 opened 3 years ago by dbayles
  1

• Error in pair step

  #35 opened 3 years ago by erinpnewcomer
  4

• filtering used to create *.all_seqs.fna file?

  #33 opened 3 years ago by tracylnicholson
  1

• Installation without conda or singularity

  #24 opened 3 years ago by samfux84
  4

• the sum of unique clusters in "01.clusterseq" file does not match the number of unique clusters in "03.sum_cluseter" file

  #30 opened 3 years ago by xuanji2017
  1

• Error in job genotype while creating output

  #20 opened 3 years ago by MKorzhanova
  2

• KeyError

  #27 opened 3 years ago by Kylies5
  8

• No output file, no error message

  #28 opened 3 years ago by Kylies5
  6

• mgefinder issue

  #25 opened 3 years ago by Rick-meinersmann
  3

• Unable to run the workflow

  #18 opened 3 years ago by labrat9
  12

• Issue in converting .sam to .bam

  #23 opened 4 years ago by spencer411
  1

• How to use MGEfinder software to find MGE from assembled genome in spite of raw reads

  #21 opened 4 years ago by shakti83kumar
  2

• Problem with click and locale

  #19 opened 4 years ago by evolarjun
  1

• Calling mgefinder from a different workflow

  #17 opened 4 years ago by nongiga
  2

• Problem with clusterseq

  #16 opened 4 years ago by mrozwandowicz
  7

• Issue With Latency-Wait

  #15 opened 4 years ago by joshuakirsch
  1

• Sensitivity to detect IS elements

  #14 opened 4 years ago by Bowmore12
  1

• Categories of confidence level for the identified insertion sequence

  #13 opened 4 years ago by Bowmore12
  3

• How to choose a reference genome

  #12 opened 4 years ago by yjiakang
  2

• Question about python version required

  #7 opened 4 years ago by BioRRW
  5

• Errors at combining the inferseq files.

  #11 opened 4 years ago by Bowmore12
  4

• Can MGEfinder detect MGEs in the presence of strain diversity?

  #10 opened 4 years ago by ramiroricardo
  1

• Question about "Error in job make_database"

  #9 opened 4 years ago by JinxinMonash
  8

• Error with test dataset

  #8 opened 4 years ago by aflores18
  7

• Can I use MGEfinder to Archaea data?

  #6 opened 4 years ago by Diamonds95
  1

• Workflow without raw short reads

  #3 opened 5 years ago by jackarnold13
  10

• job pair error

  #2 opened 5 years ago by yingeddi2008
  4

• Couldn't finish the tutorial

  #1 opened 5 years ago by yingeddi2008
  2