bhklab/CoreGx

Issues

• `CoreGx::connectivityScore` throws a warning from `piano::runGSA`

  #117 opened 8 months ago by ChristopherEeles
  0

• LongTable regex subsets fail silently if one of the queries is missing

  #119 opened 8 months ago by ChristopherEeles
  0

• Improve output of callingWaterfall.R#L54

  #183 opened 8 months ago by bhaibeka
  2

• Endoaggregate Error

  #181 opened 9 months ago by jjjermiah
  0

• CoreGx installation fails on Bioc 3.19

  #176 opened 9 months ago by gladkia
  0

• Handle trailing commas via `...` in `aggregate2` method

  #166 opened 2 years ago by ChristopherEeles
  0

• `colData<-` produces persistent warnings after reassigning the original column data back to `colData` slot

  #152 opened 2 years ago by ff98li
  1

• Unclear documentation for parameters in subset,LongTable-method

  #160 opened 2 years ago by p-smirnov
  1

• Rename Slots cell to sample and drug or radiation to treatment

  #123 opened 2 years ago by ChristopherEeles
  1

• Weird Bug in Printing the LongTable/TRE

  #158 opened 2 years ago by p-smirnov
  2

• `assay<-,LongTable-method` erases all assays in `TRE` when assigning `NULL` to a specified assay slot by integer index.

  #153 opened 2 years ago by ff98li
  0

• no slot of name error

  #156 opened 2 years ago by spocks
  7

• `aggregate2` method does not respect `nthread` argument if `nthread` > 1

  #154 opened 2 years ago by ChristopherEeles
  0

• Bug in `assay<-` method for `LongTable` causing balooning memory usage if an assay contains a subset of row and column keys

  #155 opened 2 years ago by ChristopherEeles
  2

• assay<-,LongTable,character-method errors when assigning assays with subset of row or column ids

  #151 opened 2 years ago by ChristopherEeles
  0

• `subset,LongTable-method` corrupts referential integrity of summary assays

  #149 opened 2 years ago by ChristopherEeles
  2

• `reindex` method corrupts referential integrity when a summary assay is present

  #147 opened 2 years ago by ChristopherEeles
  0

• Subsetting a `TreamentResponseExperiment` corrupts referrential integrity

  #148 opened 3 years ago by ChristopherEeles
  3

• Subsetting LongTable by rows only produces unexisting assay observations and key combinations

  #146 opened 3 years ago by ff98li
  3

• Phase I: gDR integration

  #129 opened 3 years ago by ChristopherEeles
  0

• Finish `CoreSet2` constructor method

  #131 opened 3 years ago by ChristopherEeles
  0

• LongTableDataMapper show method doesn't display columns which will be renamed

  #138 opened 3 years ago by ChristopherEeles
  0

• Write some unit tests for some curve fitting related functions

  #137 opened 3 years ago by p-smirnov
  0

• The `assays(TreatmentResponseExperiment)` method is really slow in WSL2

  #134 opened 3 years ago by ChristopherEeles
  0

• Finish this presentation

  #132 opened 3 years ago by ChristopherEeles
  0

• Push LongTable aggregate methods to Bioconductor

  #122 opened 3 years ago by ChristopherEeles
  1

• Write tests to ensure `LongTable` -> `data.table` -> `LongTable` is symmetric (i.e., doesn't lose data)

  #128 opened 3 years ago by ChristopherEeles
  1

• Phase II: gDR integration

  #130 opened 3 years ago by ChristopherEeles
  0

• as(LongTable, 'data.table') method is dropping rows

  #126 opened 3 years ago by ChristopherEeles
  0

• Problem with callingWaterfall

  #120 opened 3 years ago by hanbyuls
  4

• Update the CoreGx summary* Methods

  #124 opened 3 years ago by ChristopherEeles
  0

• mcc p-value is not correct for negative estimate

  #118 opened 4 years ago by spocks
  5

• summarizeSensitivityProfiles

  #112 opened 4 years ago by chuntul
  0

• unionList

  #113 opened 4 years ago by chuntul
  0

• updateCellId

  #114 opened 4 years ago by chuntul
  0

• updateDrugId

  #115 opened 4 years ago by chuntul
  0

• sensNumber

  #106 opened 4 years ago by chuntul
  0

• showSigAnnot

  #108 opened 4 years ago by chuntul
  0

• stripWhiteSpace

  #109 opened 4 years ago by chuntul
  0

• subsetTo

  #110 opened 4 years ago by chuntul
  0

• summarizeMolecularProfiles

  #111 opened 4 years ago by chuntul
  0

• rescale

  #99 opened 4 years ago by chuntul
  0

• sanitizeInput

  #100 opened 4 years ago by chuntul
  0

• sensitivityInfo

  #101 opened 4 years ago by chuntul
  0

• sensitivityMeasures

  #103 opened 4 years ago by chuntul
  0

• sensitivityProfiles

  #104 opened 4 years ago by chuntul
  0

• updateMaxConc

  #116 opened 4 years ago by chuntul
  0

• sensitivityInfo<-

  #102 opened 7 years ago by chuntul
  0

• sensitivityProfiles<-

  #105 opened 7 years ago by chuntul
  0

• sensNumber<-

  #107 opened 7 years ago by chuntul
  0