bigbio/pmultiqc

Issues

• Add more properties and metrics in pmultiqc

  #100 opened 7 months ago by ypriverol
  0

• movement from 1.19 -> 1.23 multiqc

  #98 opened 8 months ago by ypriverol
  1

• pmultiqc don't support identification workflow

  #96 opened a year ago by daichengxin
  0

• Error in plasama dataset

  #93 opened a year ago by ypriverol
  0

• Performance plot

  #34 opened a year ago by timosachsenberg
  2

• pmultiqc priorities and bugs 2024

  #92 opened a year ago by ypriverol
  0

• Allow charge > 2 and MS level > 2

  #46 opened a year ago by jpfeuffer
  0

• Document how to configure this module for different filenames and folders

  #48 opened 3 years ago by jpfeuffer
  2

• Use abbreviations or icons for modifications

  #61 opened a year ago by jpfeuffer
  0

• [Feature request] New Metrics

  #29 opened 4 years ago by jpfeuffer
  3

• plug the package in proteomicsLFQ pipeline

  #24 opened a year ago by ypriverol
  5

• Improving the report from PTX

  #22 opened a year ago by ypriverol
  2

• Test results Spectra Tracking looks weird

  #19 opened a year ago by jpfeuffer
  5

• Quant data from MSstats output or Triqler

  #14 opened a year ago by ypriverol
  2

• Some metrics to be included

  #8 opened a year ago by ypriverol
  2

• Interesting bug when the number of samples is two big

  #89 opened a year ago by ypriverol
  0

• Order of pmultiqc reports and DDA MS1 TIC

  #88 opened a year ago by ypriverol
  0

• [Discussion] Hard coded mzml paths

  #80 opened a year ago by jspaezp
  9

• Another error pmultiqc

  #82 opened 2 years ago by ypriverol
  5

• Another CPTAC error in pmultiqc

  #83 opened 2 years ago by ypriverol
  1

• Another CPTAC error of pmultiqc, memory

  #85 opened 2 years ago by ypriverol
  0

• Error pmultiqc in ITRAQ dataset

  #81 opened 2 years ago by ypriverol
  2

• Move parsing of mzML to a step in the workflow

  #63 opened 2 years ago by jpfeuffer
  3

• Delta mass plot labelling wrong

  #60 opened 2 years ago by jpfeuffer
  0

• Errors with mzTab when decoy field now availabe

  #69 opened 3 years ago by ypriverol
  0

• Add search engine score summaries

  #62 opened 3 years ago by jpfeuffer
  21

• Write more tests

  #50 opened 3 years ago by jpfeuffer
  0

• pmultiqc is not working the search peptides

  #53 opened 3 years ago by ypriverol
  2

• Refactoring of quantification tables

  #54 opened 3 years ago by ypriverol
  2

• pmultiqc and DIA heatmap

  #58 opened 3 years ago by ypriverol
  0

• Searchable tables

  #18 opened 3 years ago by jpfeuffer
  1

• Refactor binning

  #47 opened 3 years ago by jpfeuffer
  1

• Meaning of "Contaminants" metric in "Performance Overview" heatmap?

  #38 opened 3 years ago by hendrikweisser
  4

• Use scale=False and assign a color per number in the experimental design

  #49 opened 3 years ago by jpfeuffer
  0

• Error analyzing proteomicslfq test data

  #35 opened 3 years ago by jpfeuffer
  2

• More errors from usage in proteomicslfq

  #37 opened 3 years ago by jpfeuffer
  2

• Files in "Spectra Tracking" table are listed out of order

  #39 opened 3 years ago by hendrikweisser
  3

• move to pip, bioconda and biocontainers

  #23 opened 4 years ago by ypriverol
  1

• No "filling bars" for numbered columns in experimental design

  #16 opened 4 years ago by jpfeuffer
  1

• More rows of quantified peptides through pagination

  #17 opened 4 years ago by jpfeuffer
  2

• Final number of peptides for mzTab

  #7 opened 4 years ago by ypriverol
  1

• Distribution of peptides per protein

  #2 opened 4 years ago by ypriverol
  1

• Report plot for delta mass

  #1 opened 4 years ago by ypriverol
  3

• The The number of peptides finally identified is inconsistent in mzTab and csv

  #20 opened 4 years ago by daichengxin
  13

• Remove spectra_ref from reports

  #12 opened 4 years ago by ypriverol
  1

• Peaks per MS2

  #4 opened 4 years ago by ypriverol
  1

• Peaks intensity distribution

  #5 opened 4 years ago by ypriverol
  1

• Distribution of precursor charges

  #3 opened 4 years ago by ypriverol
  0

• generate the table of contents

  #6 opened 4 years ago by ypriverol
  1

• Fist prototype commit to the project

  #10 opened 4 years ago by ypriverol
  0