bigdatagenomics/gnocchi

Issues

• Give warning message when user is running logistic regression on non-categorical data

  #19 opened 3 years ago by nathanielparke
  0

• Fix genotype filters for missingness, MAF, and genotyping rate

  #22 opened 3 years ago by nathanielparke
  0

• Generating new vcf test files with real rsIDs

  #29 opened 7 years ago by kunalgosar
  0

• Gnocchi cleanup

  #25 opened 8 years ago by tkdagdelen
  0

• Adding annotations to Associations from ClinVar

  #28 opened 8 years ago by adgirish
  2

• add validation stringency tag to Gnocchi for loggin singular matrix exceptions

  #31 opened 8 years ago by tkdagdelen
  0

• Repository cleanup

  #5 opened 8 years ago by heuermh
  2

• make gnocchi-test great again

  #30 opened 8 years ago by tkdagdelen
  0

• Uncomment/Remove large blocks of code

  #8 opened 8 years ago by akmorrow13
  1

• Match Plink's Data Cleaning

  #14 opened 8 years ago by nathanielparke
  2

• MAF filter default between plink and gnocchi equal

  #16 opened 8 years ago by nathanielparke
  1

• LoadGenotypes does not detect existing ADAM Parquet files

  #23 opened 8 years ago by p-yang
  0

• Release Gnocchi Version 0.1.0

  #24 opened 8 years ago by tkdagdelen
  0

• Make a Readme

  #1 opened 8 years ago by tkdagdelen
  1

• Update ADAM and Spark versions

  #27 opened 8 years ago by tkdagdelen
  0

• review tests and add rigor to testing suites where necessary

  #26 opened 8 years ago by tkdagdelen
  0

• Write tests for Save/Load model functionality

  #15 opened 8 years ago by tkdagdelen
  0

• Add LICENSE_header.txt and update source file headers

  #6 opened 8 years ago by heuermh
  1

• Get CI set up

  #10 opened 8 years ago by fnothaft
  0

• Move to avro objects instead of classes

  #21 opened 8 years ago by akmorrow13
  0

• git tracking some test files

  #3 opened 8 years ago by devin-petersohn
  0

• permissions on bin executables not set to execute

  #2 opened 8 years ago by devin-petersohn
  0

• Use org.bdgenomics for package names and groupId

  #7 opened 8 years ago by heuermh
  0