bihealth/altamisa

Issues

• Template and docs MS Excel example

  #153 opened 2 months ago by tbrittoborges
  0

• Comprehensively use f-strings

  #116 opened 4 months ago by holtgrewe
  0

• Add list processing for Performer fields

  #140 opened 4 months ago by sellth
  0

• Allow lists in Factor Value fields

  #93 opened 4 months ago by sellth
  0

• Add wrapper classes that allow for easier immutable "evolution" of investigation file entities

  #125 opened 5 months ago by holtgrewe
  0

• Make models datatypes completely immutable

  #124 opened 5 months ago by holtgrewe
  0

• Switch from attrs to Pydantic

  #123 opened 5 months ago by holtgrewe
  0

• Adjust repository setup closer to other Python-based repositories

  #107 opened 5 months ago by holtgrewe
  1

• use release-please for releases to pypi rather than versioneer

  #118 opened 5 months ago by holtgrewe
  0

• InvestigationReader fails to properly report missing sections at EOF

  #104 opened 5 months ago by sellth
  1

• Add wrapper classes that allows for easier modification of DAG files (study/assembly)

  #126 opened 5 months ago by holtgrewe
  0

• Add IsaBundle as a container for investigation, study, assay

  #122 opened 5 months ago by holtgrewe
  0

• Use Pipenv for CI

  #121 opened 5 months ago by holtgrewe
  0

• setup type checking

  #112 opened 5 months ago by holtgrewe
  0

• use codecov for coverage

  #110 opened 5 months ago by holtgrewe
  0

• use standard split bugs/features tickets

  #108 opened 5 months ago by holtgrewe
  0

• Introduce functionality to modularly create and modify ISA models

  #102 opened 7 months ago by sellth
  0

• Relate list of values with following list of units

  #94 opened a year ago by sellth
  0

• Remove trailing empy columns in investigation sections

  #91 opened 2 years ago by mkuhring
  0

• Validate that assay samples are a subset of study samples

  #75 opened 3 years ago by mkuhring
  0

• Improve test coverage

  #85 opened 3 years ago by holtgrewe
  0

• Relationship between study and assay?

  #82 opened 4 years ago by holtgrewe
  0

• Check column number consistency in study and assay files

  #81 opened 4 years ago by mkuhring
  0

• Can ontology values have a unit?

  #80 opened 4 years ago by mkuhring
  0

• Hotfix optional filename arg for AssayReader.from_stream()

  #76 opened 4 years ago by mkuhring
  0

• Enable assay/study table row order reconstruction

  #72 opened 5 years ago by mkuhring
  3

• Reject Sample metadata in assays with warning

  #69 opened 5 years ago by mkuhring
  1

• Problem with Excel-prepared investigation files

  #68 opened 5 years ago by holtgrewe
  1

• import statements in the docs

  #60 opened 5 years ago by tleonardi
  1

• [JOSS Review] Documentation

  #64 opened 5 years ago by dsurujon
  1

• Conda version is outdated

  #62 opened 5 years ago by tleonardi
  2

• Incomplete package on PyPI

  #58 opened 5 years ago by tleonardi
  2

• Example: create ISA from scratch

  #48 opened 5 years ago by holtgrewe
  0

• Document how to get list of warnings after parsing

  #36 opened 5 years ago by mkuhring
  2

• Validate sample source and material name columns

  #35 opened 5 years ago by mkuhring
  1

• [Collection] missing tests

  #18 opened 6 years ago by mkuhring
  0

• List inequal fields of nodes with same name

  #25 opened 6 years ago by mkuhring
  0

• Adjust validations of investigation for excel editing

  #34 opened 5 years ago by mkuhring
  0

• Add API manual

  #29 opened 5 years ago by mkuhring
  2

• Keep information about data origin in nodes to improve validation messages

  #46 opened 5 years ago by mkuhring
  0

• Need to add more smoke tests

  #3 opened 6 years ago by mkuhring
  3

• [Collection] missing validations

  #17 opened 5 years ago by mkuhring
  3

• Add independent validation

  #42 opened 5 years ago by mkuhring
  0

• [Validation] check study/assay name uniquenes

  #45 opened 5 years ago by mkuhring
  1

• Add support for multiple HPO Terms

  #26 opened 5 years ago by holtgrewe
  1

• Enable Library Name

  #27 opened 5 years ago by mkuhring
  0

• Add CLI tools

  #37 opened 5 years ago by mkuhring
  0

• Add export to ISA-tab

  #28 opened 5 years ago by mkuhring
  1

• Need to finish Investigation file parsing

  #2 opened 6 years ago by mkuhring
  0

• Need to parse investigation comments

  #5 opened 6 years ago by mkuhring
  0