Pinned Repositories
abstract_wordcloud
Search PubMed for abstracts with a given author name and make a wordcloud from abstracts' text
bilgelm.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
dynamicpet
Dynamic positron emission tomography (PET) analysis
git-course
Version control for data science with git
intensity-normalization
normalize the intensities of various MR image modalities
kineticmodel
Kinetic models for dynamic PET analysis
PET2BIDS
PET2BIDS helps you convert your PET data into BIDS! raw PET scanner files (e.g. ecat, dicom) and additional side file like .e.g excel sheets
petdeface
A nipype implementation of an anatomical MR and PET defacing pipeline for BIDS datasets
silaR
Sampled Iterative Local Approximation
temporalimage
Simple calculations on 4D images with corresponding frame timing information
bilgelm's Repositories
bilgelm/dynamicpet
Dynamic positron emission tomography (PET) analysis
bilgelm/kineticmodel
Kinetic models for dynamic PET analysis
bilgelm/silaR
Sampled Iterative Local Approximation
bilgelm/temporalimage
Simple calculations on 4D images with corresponding frame timing information
bilgelm/abstract_wordcloud
Search PubMed for abstracts with a given author name and make a wordcloud from abstracts' text
bilgelm/bilgelm.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
bilgelm/git-course
Version control for data science with git
bilgelm/intensity-normalization
normalize the intensities of various MR image modalities
bilgelm/linreg_interaction_centering
An interactive shinyapp illustrating how to interpret the terms in a linear regression when an interaction is included as an independent variable
bilgelm/MELD
Mixed Effects models for Large Datasets
bilgelm/nanslice
A Python implementation of 'dual-coding'
bilgelm/niwidgets
bilgelm/PET2BIDS
PET2BIDS helps you convert your PET data into BIDS! raw PET scanner files (e.g. ecat, dicom) and additional side file like .e.g excel sheets
bilgelm/petdeface
A nipype implementation of an anatomical MR and PET defacing pipeline for BIDS datasets
bilgelm/NiMARE
Coordinate- and Image-based meta-analysis in Python
bilgelm/nimare_tutorial
bilgelm/numpy
The fundamental package for scientific computing with Python.
bilgelm/PET_spatial_resolution_confound
bilgelm/PiB_analysis
PiB data analysis for WRAP and BLAS
bilgelm/progscore
bilgelm/SILA-AD-Biomarker
The sampled iterative local approximation algorithm was developed by Dr. Betthauser at the University of Wisconsin-Madison to model longitudinal amyloid PET data and estimate individual A+ onset age. This algorithm may have applications in other areas where long-term population trajectories can be surmised from shorter individual longitudinal assessments.
bilgelm/simple-image-processing
A simple image processing example: thresholding, masking, morphological operations.