/kineticmodel

Kinetic models for dynamic PET analysis

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kineticmodel

Kinetic models for dynamic PET analysis

Installation

Clone this repository to your machine, then type in terminal: pip install -e PATH_TO/kineticmodel

If you'd like to have wrappers for integration with nipype, use the nipype extra: pip install -e PATH_TO/kineticmodel[nipype]

To-do:

Must-to-have:

  • open PET data set to use in examples
  • save_results implementation in kineticmodel.py
  • speed up SRTM_Lammertsma1996
  • add examples for region-wise processing
  • add examples for voxel-wise processing
  • Additional tests to increase code coverage to 80%
  • Improve ReadMe and donwload/install instructions

Nice-to-have:

  • implementation of srtm2
  • wrapper function for voxelwise image processing
  • wrapper function for vertexwise image processing
  • nipype integration
  • ❔ command line tools
  • BIDS integration
  • ❓ Incorporate unit handling with a package like pint 🍺, units, numericalunits, or astropy.units